From 9f2ad693eae7abbd0b4f93db9a76caecf79a759a Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Thu, 24 Apr 2014 14:02:47 +0000
Subject: [PATCH] Kc calculation seems to work. Performance issues persists.

---
 src/tape |   17 +++++++++++------
 1 files changed, 11 insertions(+), 6 deletions(-)

diff --git a/src/tape b/src/tape
index 3f2386a..27abf01 100644
--- a/src/tape
+++ b/src/tape
@@ -3,6 +3,8 @@
 nshell=17
 # dmax is the max. bond length (in units l_min)
 dmax=1.7
+# dmin_interspecies in the min. dist. between different vertex species (in units l_min)
+dmin_interspecies=1.2
 # bending rigidity of the membrane (in units kT)
 xk0=10.0
 # max step size (in units l_min)
@@ -12,7 +14,7 @@
 # (pswitch=1: calc. p*dV energy contribution)
 pswitch = 0
 # pressure difference: p_inside - p_outside (in units kT/l_min^3):
-pressure = -10.0
+pressure=0.0
 
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
@@ -24,15 +26,15 @@
 
 ####### Filament (inside the vesicle) definitions ###########
 # nfil is a number of filaments inside the vesicle
-nfil=1
+nfil=0
 # nfono is a number of monomers in each filament
 nfono=300
 # Persistence lenght of the filaments (in units l_min)
-xi=100
+xi=0
 
 ####### Nucleus (inside the vesicle) ###########
 # Radius of an impenetrable hard sphere inside the vesicle
-R_nucleus=5
+R_nucleus=0
 
 #######  Cell definitions ############
 nxmax=60
@@ -42,13 +44,16 @@
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
-mcsweeps=10000
+mcsweeps=250
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
 inititer=0
 #how many records do you want on the disk iteration are there in a run?
-iterations=5000
+iterations=15000
 
 
+###### Spherical harmonics ###########
+spherical_harmonics_coefficients=15
+
 #shut up if we are using cluster!!!
 quiet=false
 

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