From 97264e53840b3544fef002d30cb80d6e9942139b Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Wed, 04 Jan 2017 20:26:01 +0000
Subject: [PATCH] Some fixes in python code
---
src/energy.c | 29 ++++++++++++++++++++++++++++-
1 files changed, 28 insertions(+), 1 deletions(-)
diff --git a/src/energy.c b/src/energy.c
index cc5ccde..996fb16 100644
--- a/src/energy.c
+++ b/src/energy.c
@@ -200,10 +200,37 @@
inline ts_bool attraction_bond_energy(ts_bond *bond, ts_double w){
if(fabs(bond->vtx1->c)>1e-16 && fabs(bond->vtx2->c)>1e-16){
- bond->energy=w;
+ bond->energy=-w;
}
else {
bond->energy=0.0;
}
return TS_SUCCESS;
}
+
+ts_double direct_force_energy(ts_vesicle *vesicle, ts_vertex *vtx, ts_vertex *vtx_old){
+ if(fabs(vtx->c)<1e-15) return 0.0;
+// printf("was here");
+ if(fabs(vesicle->tape->F)<1e-15) return 0.0;
+
+ ts_double norml,ddp=0.0;
+ ts_uint i;
+ ts_double xnorm=0.0,ynorm=0.0,znorm=0.0;
+ /*find normal of the vertex as sum of all the normals of the triangles surrounding it. */
+ for(i=0;i<vtx->tristar_no;i++){
+ xnorm+=vtx->tristar[i]->xnorm;
+ ynorm+=vtx->tristar[i]->ynorm;
+ znorm+=vtx->tristar[i]->znorm;
+ }
+ /*normalize*/
+ norml=sqrt(xnorm*xnorm+ynorm*ynorm+znorm*znorm);
+ xnorm/=norml;
+ ynorm/=norml;
+ znorm/=norml;
+ /*calculate ddp, perpendicular displacement*/
+ ddp=xnorm*(vtx->x-vtx_old->x)+ynorm*(vtx->y-vtx_old->y)+znorm*(vtx->z-vtx_old->z);
+ /*calculate dE*/
+// printf("ddp=%e",ddp);
+ return vesicle->tape->F*ddp;
+
+}
--
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