From 96b0a0ac783d35fbf4e764fe8e610ddc2a79af27 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Wed, 04 Jan 2017 22:03:25 +0000
Subject: [PATCH] Added even more readability...
---
python/trisurf/trisurf.py | 44 ++++++++++++++++++--------------------------
1 files changed, 18 insertions(+), 26 deletions(-)
diff --git a/python/trisurf/trisurf.py b/python/trisurf/trisurf.py
index 01c3d0c..92b138b 100644
--- a/python/trisurf/trisurf.py
+++ b/python/trisurf/trisurf.py
@@ -315,7 +315,7 @@
def __init__(self, subdir='run0', tape=None, snapshot=None, runArgs=[]):
self.subdir=subdir
self.runArgs=runArgs
- self.fromSnapshot=False
+ self.isFromSnapshot=False
if(tape!=None):
self.initFromTape(tape)
if(snapshot!=None):
@@ -324,9 +324,9 @@
def initFromTape(self, tape):
- self.tape=Tape()
- self.tape.readTape(tape)
- self.tapeFile=tape
+ self.Tape=Tape()
+ self.Tape.readTape(tape)
+ self.tapeFilename=tape
def initFromSnapshot(self, snapshotfile):
try:
@@ -334,17 +334,15 @@
except:
print("Error reading snapshot file")
exit(1)
- self.fromSnapshot=True
+ self.isFromSnapshot=True
self.snapshotFile=snapshotfile
root = tree.getroot()
tapetxt=root.find('tape')
version=root.find('trisurfversion')
- self.tape=Tape()
- self.tape.setTape(tapetxt.text)
+ self.Tape=Tape()
+ self.Tape.setTape(tapetxt.text)
def getPID(self):
-# self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
- #self.Dir.makeifnotexist()
try:
fp = open(os.path.join(self.Dir.fullpath(),'.lock'))
except IOError as e:
@@ -354,8 +352,6 @@
return int(pid)
def getLastIteration(self):
-# self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
- #self.Dir.makeifnotexist()
try:
fp = open(os.path.join(self.Dir.fullpath(),'.status'))
except IOError as e:
@@ -365,7 +361,7 @@
return int(status)
def isCompleted(self):
- if int(self.tape.getValue("iterations"))+int(self.tape.getValue("inititer"))==self.getLastIteration()+1:
+ if int(self.Tape.getValue("iterations"))+int(self.Tape.getValue("inititer"))==self.getLastIteration()+1:
return True
else:
return False
@@ -401,20 +397,19 @@
if(shutil.which('trisurf')==None):
print("Error. Trisurf executable not found in PATH. Please install trisurf prior to running trisurf manager.")
exit(1)
-# self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
#Symlinks tape file to the directory or create tape file from snapshot in the direcory...
if(self.Dir.makeifnotexist()):
- if(self.fromSnapshot==False):
+ if(self.isFromSnapshot==False):
try:
- os.symlink(os.path.abspath(self.tapeFile), self.Dir.fullpath()+"/tape")
+ os.symlink(os.path.abspath(self.tapeFilename), self.Dir.fullpath()+"/tape")
except:
- print("Error while symlinking "+os.path.abspath(self.tapeFile)+" to "+self.Dir.fullpath()+"/tape")
+ print("Error while symlinking "+os.path.abspath(self.tapeFilename)+" to "+self.Dir.fullpath()+"/tape")
exit(1)
else:
try:
with open (os.path.join(self.Dir.fullpath(),"tape"), "w") as myfile:
#myfile.write("#This is automatically generated tape file from snapshot")
- myfile.write(str(self.tape.rawText))
+ myfile.write(str(self.Tape.rawText))
except:
print("Error -- cannot make tapefile "+ os.path.join(self.Dir.fullpath(),"tape")+" from the snapshot in the running directory")
exit(1)
@@ -432,7 +427,7 @@
lastVTU=self.getLastVTU() #we get last VTU file in case we need to continue the simulation from last snapshot. Need to be done before the Dir.goto() call.
self.Dir.goto()
print("Starting trisurf-ng executable in "+self.Dir.fullpath())
- if(self.fromSnapshot==True):
+ if(self.isFromSnapshot==True):
#here we try to determine whether we should continue the simulation or start from last known VTU snapshot.
if(lastVTU==None):
initSnap="initial_snapshot.vtu"
@@ -457,11 +452,11 @@
maindir=""
for p,v in zip(prefix,variables):
if(v=="xk0"):
- tv=str(round(float(self.tape.config[v])))
+ tv=str(round(float(self.Tape.config[v])))
if sys.version_info<(3,0):
- tv=str(int(float(self.tape.config[v])))
+ tv=str(int(float(self.Tape.config[v])))
else:
- tv=self.tape.config[v]
+ tv=self.Tape.config[v]
maindir=maindir+p+tv
self.maindir=maindir
return
@@ -471,13 +466,11 @@
return
def getStatistics(self, statfile="statistics.csv"):
-# self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
-# self.statistics=Statistics(self.Dir.fullpath(), statfile)
self.Comment=FileContent(os.path.join(self.Dir.fullpath(),".comment"))
pid=self.getPID()
status=self.getStatus()
if(self.Statistics.fileOK):
- ETA=str(datetime.timedelta(microseconds=(int(self.tape.config['iterations'])-int(self.Statistics.last))*self.Statistics.dT)*1000000)
+ ETA=str(datetime.timedelta(microseconds=(int(self.Tape.config['iterations'])-int(self.Statistics.last))*self.Statistics.dT)*1000000)
if(status==TS_NONEXISTANT or status==TS_NOLOCK):
statustxt="Not running"
pid=""
@@ -508,13 +501,12 @@
def writeComment(self, data, mode='w'):
-# self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
self.Comment=FileContent(os.path.join(self.Dir.fullpath(),".comment"))
self.Comment.writefile(data,mode=mode)
def getLastVTU(self):
- vtuidx=self.getLastIteration()-int(self.tape.getValue("inititer"))
+ vtuidx=self.getLastIteration()-int(self.Tape.getValue("inititer"))
if vtuidx<0:
return None
else:
--
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