From 9447bd5e078944df080b75e054cd4dc95c6c9303 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Wed, 22 Jun 2016 13:06:50 +0000
Subject: [PATCH] Merge with paraview's branch. Added triangles as cells for visualization

---
 src/general.h |   64 ++++++++++++++++++++++++++++++--
 1 files changed, 60 insertions(+), 4 deletions(-)

diff --git a/src/general.h b/src/general.h
index e47ef1c..31de50a 100644
--- a/src/general.h
+++ b/src/general.h
@@ -1,8 +1,10 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _GENERAL_H
 #define _GENERAL_H
 
 #include<stdarg.h>
 #include<stdio.h>
+#include<gsl/gsl_complex.h>
 /* @brief This is a header file, defining general constants and structures.
   * @file header.h
   * @author Samo Penic
@@ -222,6 +224,7 @@
 typedef struct {
     ts_uint l;
     ts_double **ulm;
+    gsl_complex **ulmComplex;
     ts_double **sumUlm2;
     ts_uint N;
     ts_double **co;
@@ -247,6 +250,46 @@
 
 
 
+typedef struct {
+	long int nshell;
+	long int ncxmax;
+	long int ncymax;
+	long int nczmax;
+	long int npoly;
+	long int nmono;
+	long int nfil;
+	long int nfono;
+	long int R_nucleus;
+	ts_double R_nucleusX;
+	ts_double R_nucleusY;
+	ts_double R_nucleusZ;
+	long int pswitch;
+    long int constvolswitch;
+    long int constareaswitch;
+    ts_double constvolprecision;
+    	char *multiprocessing;
+   	long int brezveze0;
+    	long int brezveze1;
+    	long int brezveze2;
+    	ts_double xk0;
+	ts_double dmax;
+	ts_double dmin_interspecies;
+	ts_double stepsize;
+	ts_double kspring;
+	ts_double xi;
+	ts_double pressure;
+	long int iterations;
+	long int inititer;
+	long int mcsweeps;
+	long int quiet;
+	long int shc;
+	long int number_of_vertices_with_c0;
+	ts_double c0;
+	ts_double w;
+} ts_tape;
+
+
+
 
 typedef struct {
 	ts_vertex_list *vlist;
@@ -268,9 +311,13 @@
 	ts_double spring_constant;
 	ts_double pressure;
 	ts_int pswitch;
-
+    ts_tape *tape;
 	ts_double R_nucleus;
-
+	ts_double R_nucleusX;
+	ts_double R_nucleusY;
+	ts_double R_nucleusZ;
+	ts_double nucleus_center[3];
+    ts_double area;
 } ts_vesicle;
 
 
@@ -278,8 +325,10 @@
 /* GLOBAL VARIABLES */
 
 int quiet;
-
-
+ts_double V0;
+ts_double A0;
+ts_double epsvol;
+ts_double epsarea;
 /* FUNCTIONS */
 
 /** Non-fatal error function handler:
@@ -300,4 +349,11 @@
 #define VTX(n) &(vlist->vtx[n])
 #define VTX_DATA(n) vlist->vtx[n].data
 
+
+/* FOR PID GENERATION ROUTINE */
+#define CPF_CLOEXEC 1
+
+int createPidFile(const char *progName, const char *pidFile, int flags);
+
+int lockRegion(int fd, int type, int whence, int start, int len);
 #endif

--
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