From 8ed8fdb663089e2bc53fd537611a6b45a09cc502 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sat, 30 Nov 2013 16:54:34 +0000
Subject: [PATCH] Seems to solve everything until bondflip

---
 src/general.h |   21 +++++++++++++++++----
 1 files changed, 17 insertions(+), 4 deletions(-)

diff --git a/src/general.h b/src/general.h
index 1a90e97..03dcc1d 100644
--- a/src/general.h
+++ b/src/general.h
@@ -61,6 +61,11 @@
 */
 #define TS_DOUBLE_DOUBLE
 
+/** @brief Constant defines the size by which vertex_list expands at once, so expansion is not needed each time new data arrives. Also
+ * vlist will be decreased by same steps.
+ */
+#define TS_VLIST_CHUNK 7
+
 /** For the purpose of greater flexibility all data types used in the program
  *  shouldn't use standard C types, but should use types defined here.
  *	ts_int (uses int)
@@ -127,6 +132,7 @@
 
 
 
+
 /** @brief Data structure of all data connected to a vertex
  *
  *  ts_vertex holds the data for one single point (bead, vertex). To understand how to use it
@@ -136,8 +142,9 @@
         ts_double x; /**< The x coordinate of vertex. */
         ts_double y; /**< The y coordinate of vertex. */
         ts_double z; /**< The z coordinate of vertex. */
-        ts_uint neigh_no; /**< The number of neighbours. */
-        struct ts_vertex **neigh; /**< The pointer that holds neigh_no pointers to this structure. */
+//        ts_uint neigh_no; /**< The number of neighbours. */
+//        struct ts_vertex **neigh; /**< The pointer that holds neigh_no pointers to this structure. */
+	struct ts_vertex_list *neigh;
         ts_double *bond_length; /**< Obsolete! The bond lenght is moved to ts_bond */
         ts_double *bond_length_dual; /**< Obsolete! Bond length in dual lattice is moved to ts_bond! */
         ts_double curvature;
@@ -157,11 +164,13 @@
 };
 typedef struct ts_vertex ts_vertex;
 
-typedef struct {
+struct ts_vertex_list{
     ts_uint n;
+    ts_uint list_size;
     ts_vertex **vtx;
 
-} ts_vertex_list;
+};
+typedef struct ts_vertex_list ts_vertex_list;
 
 struct ts_bond {
     ts_uint idx;
@@ -169,6 +178,7 @@
 	ts_vertex *vtx2;
     ts_double bond_length;
     ts_double bond_length_dual;
+	ts_bool tainted;
 };
 typedef struct ts_bond ts_bond;
 
@@ -187,6 +197,7 @@
 	ts_double ynorm;
 	ts_double znorm;
     ts_double area; // firstly needed for sh.c
+    ts_double volume; // firstly needed for sh.c
 };
 typedef struct ts_triangle ts_triangle;
 
@@ -216,6 +227,8 @@
 typedef struct {
     ts_uint l;
     ts_double **ulm;
+    ts_double **sumUlm2;
+    ts_uint N;
     ts_double **co;
     ts_double ***Ylmi;
 } ts_spharm;

--
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