From 86b69b3803b1b31c040cede6b47bf617561b3b81 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Tue, 01 Mar 2016 08:36:37 +0000
Subject: [PATCH] Polymeres are restored
---
src/restore.c | 41 ++++++++++++++++++++++++++++++-----------
1 files changed, 30 insertions(+), 11 deletions(-)
diff --git a/src/restore.c b/src/restore.c
index 5db794e..a3196bd 100644
--- a/src/restore.c
+++ b/src/restore.c
@@ -75,7 +75,7 @@
xmlFreeDoc(doc);
- vesicle->poly_list=init_poly_list(0, 0, vesicle->vlist, vesicle);
+// vesicle->poly_list=init_poly_list(0, 0, vesicle->vlist, vesicle);
init_normal_vectors(vesicle->tlist);
mean_curvature_and_energy(vesicle);
@@ -83,7 +83,7 @@
/* TODO: cells, polymeres, filaments, core, tape */
fprintf(stderr,"Restoration completed\n");
-// write_vertex_xml_file(vesicle,999);
+ write_vertex_xml_file(vesicle,999);
vesicle_free(vesicle);
exit(0);
return TS_SUCCESS;
@@ -136,10 +136,10 @@
free(subtree);
#endif
/*parse xml subtree */
- xmlChar *nvtx, *npoly, *nfono;
+ xmlChar *nvtx, *npoly, *nmono;
nvtx = xmlGetProp(cur, (xmlChar *)"nvtx");
npoly=xmlGetProp(cur, (xmlChar *)"npoly");
- nfono=xmlGetProp(cur, (xmlChar *)"nfono");
+ nmono=xmlGetProp(cur, (xmlChar *)"nmono");
ts_tape *tape=parsetapebuffer(tapetxt);
//fprintf(stderr,"nvtx=%u\n",atoi((char *)nvtx));
//TODO: check if nvtx is in agreement with nshell from tape
@@ -147,7 +147,7 @@
//vesicle->poly_list=init_poly_list(atoi((char *)npoly),atoi((char *)nmono), vesicle->vlist, vesicle);
xmlFree(nvtx);
xmlFree(npoly);
- xmlFree(nfono);
+ xmlFree(nmono);
child = cur->xmlChildrenNode;
while (child != NULL) {
@@ -285,7 +285,7 @@
xmlNodePtr child = cur->xmlChildrenNode;
xmlChar *points;
char *pts;
- int i, idx;
+ int i, idx, polyidx, monoidx;
char *token[3];
while (child != NULL) {
if ((!xmlStrcmp(child->name, (const xmlChar *)"DataArray"))){
@@ -296,9 +296,17 @@
token[2]=strtok(NULL,"\n");
idx=0;
while(token[0]!=NULL){
- vesicle->vlist->vtx[idx]->x=atof(token[0]);
- vesicle->vlist->vtx[idx]->y=atof(token[1]);
- vesicle->vlist->vtx[idx]->z=atof(token[2]);
+ if(idx<vesicle->vlist->n){
+ vesicle->vlist->vtx[idx]->x=atof(token[0]);
+ vesicle->vlist->vtx[idx]->y=atof(token[1]);
+ vesicle->vlist->vtx[idx]->z=atof(token[2]);
+ } else {
+ polyidx=(idx-vesicle->vlist->n)/vesicle->tape->nmono;
+ monoidx=(idx-vesicle->vlist->n)%vesicle->tape->nmono;
+ vesicle->poly_list->poly[polyidx]->vlist->vtx[monoidx]->x=atof(token[0]);
+ vesicle->poly_list->poly[polyidx]->vlist->vtx[monoidx]->y=atof(token[1]);
+ vesicle->poly_list->poly[polyidx]->vlist->vtx[monoidx]->z=atof(token[2]);
+ }
for(i=0;i<2;i++) token[i]=strtok(NULL," ");
token[2]=strtok(NULL,"\n");
idx++;
@@ -315,7 +323,7 @@
xmlNodePtr child = cur->xmlChildrenNode;
xmlChar *bonds, *conname;
char *b;
- int idx;
+ int idx, polyidx;
char *token[2];
while (child != NULL) {
conname=xmlGetProp(child, (xmlChar *)"Name");
@@ -326,7 +334,18 @@
token[1]=strtok(NULL,"\n");
idx=0;
while(token[0]!=NULL){
- bond_add(vesicle->blist, vesicle->vlist->vtx[atoi(token[0])], vesicle->vlist->vtx[atoi(token[1])]);
+ if(idx<3*(vesicle->vlist->n-2)){
+ bond_add(vesicle->blist, vesicle->vlist->vtx[atoi(token[0])], vesicle->vlist->vtx[atoi(token[1])]);
+ }
+ else {
+ //find grafted vtx
+ if((vesicle->tape->nmono-1)==(idx-3*(vesicle->vlist->n-2))%(vesicle->tape->nmono)){
+ polyidx=(idx-3*(vesicle->vlist->n-2))/(vesicle->tape->nmono);
+ fprintf(stderr,"poly=%d, vertex=%d\n",polyidx,atoi(token[0]));
+ vesicle->poly_list->poly[polyidx]->grafted_vtx=vesicle->vlist->vtx[atoi(token[0])];
+ vesicle->vlist->vtx[atoi(token[0])]->grafted_poly=vesicle->poly_list->poly[polyidx];
+ }
+ }
token[0]=strtok(NULL," ");
token[1]=strtok(NULL,"\n");
idx++;
--
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