From 86b69b3803b1b31c040cede6b47bf617561b3b81 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Tue, 01 Mar 2016 08:36:37 +0000
Subject: [PATCH] Polymeres are restored

---
 src/io.h |   22 ++++++++++++++++++++--
 1 files changed, 20 insertions(+), 2 deletions(-)

diff --git a/src/io.h b/src/io.h
index 8f14b68..6c1e18a 100644
--- a/src/io.h
+++ b/src/io.h
@@ -1,13 +1,26 @@
 #ifndef _IO_H
 #define _IO_H
-
+#include <confuse.h>
 /** @ Global variables for I/O operations like filenames etc. */
 /*static char mastername[1024];
 static char prefixname[1024];
 static ts_bool restore=0;
 static char tape[1024]; */
-char path[1024];
 int force_from_tape;
+char tapetxt[128000]; //stores text file of the tape
+typedef struct{
+	ts_int force_from_tape;
+	ts_int reset_iteration_count;
+    char path[1024]; //path where all files should be added
+    char output_fullfilename[1024]; //name of the master file
+    char dump_fullfilename[1024]; //name of the dump file
+    char tape_fullfilename[1024]; //name of the tape file
+    char tape_templatefull[1024]; //name of the tape template file
+    char tape_opts[1000]; //commandline tape options
+    char dump_from_vtk[1024];
+} ts_args;
+
+ts_args command_line_args;
 
 ts_bool parse_args(int argc, char **argv);
 
@@ -60,8 +73,13 @@
 ts_bool write_vertex_vtk_file(ts_vesicle *vesicle,ts_char *filename, ts_char *text);
 ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno);
 ts_bool write_master_xml_file(ts_char *filename);
+ts_bool write_pov_file(ts_vesicle *vesicle, char *filename);
+
 ts_tape *parsetape(char *filename);
+ts_tape *parsetapebuffer(char *buffer);
 ts_bool tape_free(ts_tape *tape);
+ts_bool getcmdline_tape(cfg_t *cfg, char *opts);
+ts_bool cmdline_to_tape(cfg_t *cfg, char *key, char *val);
 
 ts_bool dump_state(ts_vesicle *vesicle, ts_uint iteration);
 ts_vesicle *restore_state(ts_uint *iteration);

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