From 8493be19b22681868f4f6686da592f4d149cdf05 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Wed, 07 Oct 2020 12:43:06 +0000
Subject: [PATCH] Debugged eigenvector problems

---
 src/energy.c |   53 +++++++++++++++++++++++++++++++++++++++++------------
 1 files changed, 41 insertions(+), 12 deletions(-)

diff --git a/src/energy.c b/src/energy.c
index e67eadc..1c50d84 100644
--- a/src/energy.c
+++ b/src/energy.c
@@ -108,6 +108,7 @@
     ts_vertex *it, *k, *kp,*km;
     ts_triangle *lm=NULL, *lp=NULL;
     ts_double sumnorm;
+    ts_double temp_length;
 
 
     ts_double Se11, Se21, Se22, Se31, Se32, Se33;
@@ -123,10 +124,10 @@
 	ts_double Sv[3][3]={{0,0,0},{0,0,0},{0,0,0}};
     // Here edge vector is calculated
 //    fprintf(stderr, "Vertex has neighbours=%d\n", vtx->neigh_no);
-    for(jj=0;jj<vtx->neigh_no;jj++){
-	edge_vector_x[jj]=vtx->neigh[jj]->x-vtx->x;
-	edge_vector_y[jj]=vtx->neigh[jj]->y-vtx->y;
-	edge_vector_z[jj]=vtx->neigh[jj]->z-vtx->z;
+
+
+
+
 	Av=0;
 	for(i=0; i<vtx->tristar_no; i++){
 		vertex_normal_x=vertex_normal_x + vtx->tristar[i]->xnorm*vtx->tristar[i]->area;
@@ -134,6 +135,10 @@
 		vertex_normal_z=vertex_normal_z + vtx->tristar[i]->znorm*vtx->tristar[i]->area;
 		Av+=vtx->tristar[i]->area/3;
 	}
+	temp_length=sqrt(pow(vertex_normal_x,2)+pow(vertex_normal_y,2)+pow(vertex_normal_z,2));
+	vertex_normal_x=vertex_normal_x/temp_length;
+	vertex_normal_y=vertex_normal_y/temp_length;
+	vertex_normal_z=vertex_normal_z/temp_length;
 
 	Pv11=1-vertex_normal_x*vertex_normal_x;
 	Pv22=1-vertex_normal_y*vertex_normal_y;
@@ -142,6 +147,22 @@
 	Pv31=vertex_normal_x*vertex_normal_z;
 	Pv32=vertex_normal_y*vertex_normal_z;
 
+
+
+
+    for(jj=0;jj<vtx->neigh_no;jj++){
+	edge_vector_x[jj]=vtx->neigh[jj]->x-vtx->x;
+	edge_vector_y[jj]=vtx->neigh[jj]->y-vtx->y;
+	edge_vector_z[jj]=vtx->neigh[jj]->z-vtx->z;
+
+	//Here we calculate normalized edge vector
+
+	temp_length=sqrt(edge_vector_x[jj]*edge_vector_x[jj]+edge_vector_y[jj]*edge_vector_y[jj]+edge_vector_z[jj]*edge_vector_z[jj]);
+	edge_vector_x[jj]=edge_vector_x[jj]/temp_length;
+	edge_vector_y[jj]=edge_vector_y[jj]/temp_length;
+	edge_vector_z[jj]=edge_vector_z[jj]/temp_length;
+
+	//end normalization
 //	printf("(%f %f %f)\n", vertex_normal_x, vertex_normal_y, vertex_normal_z);
 
 
@@ -186,6 +207,8 @@
     }
 if(lm==NULL || lp==NULL) fatal("energy_vertex: Cannot find triangles lm and lp!",233);
 
+	//Triangle normals are NORMALIZED!
+
 	sumnorm=sqrt( pow((lm->xnorm + lp->xnorm),2) + pow((lm->ynorm + lp->ynorm), 2) + pow((lm->znorm + lp->znorm), 2));
 
 	edge_normal_x[jj]=(lm->xnorm+ lp->xnorm)/sumnorm;
@@ -199,9 +222,11 @@
 
 
 	mprod[jj]=it->x*(k->y*edge_vector_z[jj]-edge_vector_y[jj]*k->z)-it->y*(k->x*edge_vector_z[jj]-k->z*edge_vector_x[jj])+it->z*(k->x*edge_vector_y[jj]-k->y*edge_vector_x[jj]);
-	phi[jj]=copysign(acos(lm->xnorm*lp->xnorm+lm->ynorm*lp->ynorm+lm->znorm*lp->znorm),mprod[jj])+M_PI;
-	he[jj]=2.0*sqrt( pow((edge_vector_x[jj]*2),2) + pow((edge_vector_y[jj]*2), 2) + pow((edge_vector_z[jj]*2), 2))*cos(phi[jj]/2.0);
-
+	phi[jj]=copysign(acos(lm->xnorm*lp->xnorm+lm->ynorm*lp->ynorm+lm->znorm*lp->znorm-1e-8),mprod[jj])+M_PI;
+//	printf("ACOS arg=%e\n", lm->xnorm*lp->xnorm+lm->ynorm*lp->ynorm+lm->znorm*lp->znorm);
+	//he was multiplied with 2 before...
+	he[jj]=sqrt( pow((edge_vector_x[jj]),2) + pow((edge_vector_y[jj]), 2) + pow((edge_vector_z[jj]), 2))*cos(phi[jj]/2.0);
+//	printf("phi[%d]=%f\n", jj,phi[jj]);
 
 	Se11=edge_binormal_x[jj]*edge_binormal_x[jj]*he[jj];
 	Se21=edge_binormal_x[jj]*edge_binormal_y[jj]*he[jj];
@@ -226,7 +251,7 @@
 	Sv[2][2]+=We_Av* (Pv31*(Pv31*Se11+Pv32*Se21+Pv33*Se31)+Pv32*(Pv31*Se21+Pv32*Se22+Pv33*Se32)+Pv33*(Pv31*Se31+Pv32*Se32+Pv33*Se33));
 //	printf("(%f %f %f); (%f %f %f); (%f %f %f)\n", edge_vector_x[jj], edge_vector_y[jj], edge_vector_z[jj], edge_normal_x[jj], edge_normal_y[jj], edge_normal_z[jj], edge_binormal_x[jj], edge_binormal_y[jj], edge_binormal_z[jj]);
 
-    }
+    } // END FOR JJ
 
 	gsl_matrix_set(gsl_Sv, 0,0, Sv[0][0]);
 	gsl_matrix_set(gsl_Sv, 0,1, Sv[0][1]);
@@ -238,13 +263,17 @@
 	gsl_matrix_set(gsl_Sv, 2,1, Sv[2][1]);
 	gsl_matrix_set(gsl_Sv, 2,2, Sv[2][2]);
 
+//	printf("Se= %f, %f, %f\n    %f, %f, %f\n    %f, %f, %f\n", Se11, Se21, Se31, Se21, Se22, Se32, Se31, Se32, Se33);
+//	printf("Pv= %f, %f, %f\n    %f, %f, %f\n    %f, %f, %f\n", Pv11, Pv21, Pv31, Pv21, Pv22, Pv32, Pv31, Pv32, Pv33);
+	printf("Sv= %f, %f, %f\n    %f, %f, %f\n    %f, %f, %f\n", Sv[0][0], Sv[0][1], Sv[0][2], Sv[1][0], Sv[1][1], Sv[1][2], Sv[2][0], Sv[2][1], Sv[2][2]);
+
 	gsl_eigen_nonsymm_params(0, 1, workspace);
 	gsl_eigen_nonsymm(gsl_Sv, Sv_eigen, workspace);
 
-	printf("Eigenvalues: %f+ i%f, %f+i%f, %f+i%f\n", 
-	GSL_REAL(gsl_vector_complex_get(Sv_eigen, 0)), GSL_IMAG(gsl_vector_complex_get(Sv_eigen, 0)),
-	GSL_REAL(gsl_vector_complex_get(Sv_eigen, 1)), GSL_IMAG(gsl_vector_complex_get(Sv_eigen, 1)),
-	GSL_REAL(gsl_vector_complex_get(Sv_eigen, 2)), GSL_IMAG(gsl_vector_complex_get(Sv_eigen, 2))
+	printf("Eigenvalues: %f, %f, %f\n", 
+	GSL_REAL(gsl_vector_complex_get(Sv_eigen, 0)),
+	GSL_REAL(gsl_vector_complex_get(Sv_eigen, 1)),
+	GSL_REAL(gsl_vector_complex_get(Sv_eigen, 2))
 	);
 	vtx->energy=0.0;
 

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