From 8108947140ecfc116f4e1c9090499c1b4ad4c3b7 Mon Sep 17 00:00:00 2001
From: Miha <miha.fosnaric@fe.uni-lj.si>
Date: Fri, 15 Jul 2016 10:18:21 +0000
Subject: [PATCH] Mean curvature averaged over vesicle area added.

---
 README.md |   47 ++++++++++++++++++++++++++++++++---------------
 1 files changed, 32 insertions(+), 15 deletions(-)

diff --git a/README.md b/README.md
index 788c0df..ab63732 100644
--- a/README.md
+++ b/README.md
@@ -5,39 +5,56 @@
 1. Instalation
 --------------
 
-To compile the program, user must have ``automake'', and ``gcc'' tools installed on the computer.
+To compile the program, user must have ``automake``, and ``gcc`` tools installed on the computer.
 
-Required libraries are:
+Required C libraries are:
 * libconfuse
 * libgsl
 * libxml2
+* zlib
+
+and python libraries for running tsmgr:
+* tabulate
+* psutil
+* configobj
 
 On Debian based systems, install prerequisities by typing the following command in the command line:
 
-``sudo apt-get install libconfuse-dev libgsl0-dev libxml2-dev automake gcc''
+``sudo apt-get install libconfuse-dev libgsl0-dev libxml2-dev zlib1g-dev automake gcc python3-psutil python3 python3-pip``
+``sudo pip3 install tabulate configobj``
 
 Move to the project root directory and compile with:
 
-``./configure''
-``make''
-``make install''
+``./configure``
+
+``make``
+
+``make install``
 
 If you are experiencing difficulties due to different automake versions, proceed with the longer procedure:
 
-``aclocal''
-``autoheader''
-``automake -ac''
-``autoconf''
-``./configure''
-``make''
-``make install''
+``aclocal``
 
+``autoheader``
+
+``automake -ac``
+
+``autoconf``
+
+``./configure``
+
+``make``
+
+``make install``
+
+
+This procedure can be done automatically by calling the build.sh script.
 
 2. Use
 ------
 
-Prepare tape file, storing the definition for the simulation. You can use the sample tape file in the ``src/'' directory as a template for your simulation.
+Prepare tape file, storing the definition for the simulation. You can use the sample tape file in the ``src/`` directory as a template for your simulation.
 
-Run simulations with ``trisurf-ng --force-from-tape'' for initial run, or ``trisurf-ng'' for continuing aborted simulations.
+Run simulations with ``trisurf-ng --force-from-tape`` for initial run, or ``trisurf-ng`` for continuing aborted simulations.
 
 

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