From 7f607660a91b969daa19dbdb62628691bfee8f7e Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Wed, 02 Mar 2016 16:12:06 +0000
Subject: [PATCH] Added modeline string into every c and h file

---
 src/constvol.c             |    1 
 src/snapshot.c             |   50 +++++++++++--------------
 src/vertexmove.h           |    1 
 src/io.c                   |    1 
 src/stats.c                |    1 
 src/vesicle.h              |    1 
 src/stats.h                |    1 
 src/vesicle.c              |    1 
 src/constvol.h             |    1 
 src/initial_distribution.c |    1 
 src/general.h              |    1 
 src/general.c              |    1 
 src/vertexmove.c           |    1 
 src/io.h                   |    1 
 src/snapshot.h             |    1 
 src/timestep.c             |    1 
 src/bond.h                 |    1 
 src/shcomplex.c            |    1 
 src/timestep.h             |    1 
 src/bond.c                 |    1 
 src/triangle.h             |    1 
 src/shcomplex.h            |    1 
 src/triangle.c             |    1 
 src/bondflip.h             |    1 
 src/cell.c                 |    1 
 src/main.c                 |    4 ++
 src/bondflip.c             |    1 
 src/cell.h                 |    1 
 src/spherical_trisurf_ff.c |    1 
 src/co_test.c              |    1 
 src/poly.h                 |    1 
 src/frame.h                |    1 
 src/dumpstate.c            |    1 
 src/shdiscover.c           |    1 
 src/poly.c                 |    1 
 src/vertex.c               |    1 
 src/initial_distribution.h |    1 
 src/sh.h                   |    1 
 src/spherical_trisurf.c    |    1 
 src/energy.c               |    1 
 src/restore.h              |    1 
 src/dumpstate.h            |    1 
 src/frame.c                |    1 
 src/restore.c              |    1 
 src/sh.c                   |    1 
 src/energy.h               |    1 
 src/vertex.h               |    1 
 47 files changed, 71 insertions(+), 28 deletions(-)

diff --git a/src/bond.c b/src/bond.c
index ce255ca..21b7b56 100644
--- a/src/bond.c
+++ b/src/bond.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdlib.h>
 #include "general.h"
 #include "vertex.h"
diff --git a/src/bond.h b/src/bond.h
index 34cdba5..d231342 100644
--- a/src/bond.h
+++ b/src/bond.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _BOND_H
 #define _BOND_H
 
diff --git a/src/bondflip.c b/src/bondflip.c
index bb6bd33..858dc74 100644
--- a/src/bondflip.c
+++ b/src/bondflip.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdlib.h>
 #include<math.h>
 #include "general.h"
diff --git a/src/bondflip.h b/src/bondflip.h
index 947555f..e3bb19d 100644
--- a/src/bondflip.h
+++ b/src/bondflip.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _H_BONDFLIP
 #define _H_BONDFLIP
 
diff --git a/src/cell.c b/src/cell.c
index ed86b16..a1413eb 100644
--- a/src/cell.c
+++ b/src/cell.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdlib.h>
 #include "general.h"
 #include "vertex.h"
diff --git a/src/cell.h b/src/cell.h
index 20a58e4..1623846 100644
--- a/src/cell.h
+++ b/src/cell.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _H_CELL
 #define _H_CELL
 ts_cell_list  *init_cell_list(ts_uint ncmax1, ts_uint ncmax2, ts_uint ncmax3, ts_double stepsize);
diff --git a/src/co_test.c b/src/co_test.c
index 61a6a3a..0a5e23e 100644
--- a/src/co_test.c
+++ b/src/co_test.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include "general.h"
 #include "sh.h"
 #include <stdlib.h>
diff --git a/src/constvol.c b/src/constvol.c
index 2a1d40d..63c07e0 100644
--- a/src/constvol.c
+++ b/src/constvol.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdlib.h>
 #include<stdio.h>
 #include<string.h>
diff --git a/src/constvol.h b/src/constvol.h
index 5d1eb71..341c587 100644
--- a/src/constvol.h
+++ b/src/constvol.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _H_CONSTVOL
 #define _H_CONSTVOL
 
diff --git a/src/dumpstate.c b/src/dumpstate.c
index 9d1e2b2..4493f71 100644
--- a/src/dumpstate.c
+++ b/src/dumpstate.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include <string.h>
 #include "general.h"
 #include <stdio.h>
diff --git a/src/dumpstate.h b/src/dumpstate.h
index a4ded6f..de66b70 100644
--- a/src/dumpstate.h
+++ b/src/dumpstate.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _H_DUMPSTATE
 #define _H_DUMPSTATE
 
diff --git a/src/energy.c b/src/energy.c
index 3173f67..4f2b386 100644
--- a/src/energy.c
+++ b/src/energy.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdlib.h>
 #include "general.h"
 #include "energy.h"
diff --git a/src/energy.h b/src/energy.h
index 8a37b85..e463815 100644
--- a/src/energy.h
+++ b/src/energy.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _ENERGY_H
 #define _ENERGY_H
 ts_bool mean_curvature_and_energy(ts_vesicle *vesicle);
diff --git a/src/frame.c b/src/frame.c
index ec94292..b29d3e3 100644
--- a/src/frame.c
+++ b/src/frame.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdlib.h>
 #include "general.h"
 #include "cell.h"
diff --git a/src/frame.h b/src/frame.h
index b0e451c..fbd0a78 100644
--- a/src/frame.h
+++ b/src/frame.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _H_FRAME
 #define _H_FRAME
 ts_bool centermass(ts_vesicle *vesicle);
diff --git a/src/general.c b/src/general.c
index a600800..1ada40d 100644
--- a/src/general.c
+++ b/src/general.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdio.h>
 #include<stdlib.h>
 #include "general.h"
diff --git a/src/general.h b/src/general.h
index 393eafe..24c5f89 100644
--- a/src/general.h
+++ b/src/general.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _GENERAL_H
 #define _GENERAL_H
 
diff --git a/src/initial_distribution.c b/src/initial_distribution.c
index 3af821d..7dfd23d 100644
--- a/src/initial_distribution.c
+++ b/src/initial_distribution.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdlib.h>
 #include<math.h>
 #include<stdio.h>
diff --git a/src/initial_distribution.h b/src/initial_distribution.h
index 39815d9..c5184a6 100644
--- a/src/initial_distribution.h
+++ b/src/initial_distribution.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include "io.h"
 
 
diff --git a/src/io.c b/src/io.c
index 8e97a8f..51ef836 100644
--- a/src/io.c
+++ b/src/io.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include "general.h"
 #include<stdio.h>
 #include "io.h"
diff --git a/src/io.h b/src/io.h
index 6c1e18a..11555f3 100644
--- a/src/io.h
+++ b/src/io.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _IO_H
 #define _IO_H
 #include <confuse.h>
diff --git a/src/main.c b/src/main.c
index 8cd8321..8cf3e92 100644
--- a/src/main.c
+++ b/src/main.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdio.h>
 #include<math.h>
 #include<stdlib.h>
@@ -28,6 +29,9 @@
 	ts_uint start_iteration=0;
 	force_from_tape=0;
 	parse_args(argv,argc); // sets global variable command_line_args (defined in io.h)
+	ts_fprintf(stdout,"TRISURF-NG v. %s, compiled on: %s %s.\n", TS_VERSION, __DATE__, __TIME__);
+	ts_fprintf(stdout,"Programming done by: Samo Penic and Miha Fosnaric\n");
+	ts_fprintf(stdout,"Released under terms of GPLv3\n");
 	ts_fprintf(stdout,"Starting program...\n\n");
 //	vesicle = parseDump("timestep_000000.vtu");
 //		run_simulation(vesicle, vesicle->tape->mcsweeps, vesicle->tape->inititer, vesicle->tape->iterations, 1);
diff --git a/src/poly.c b/src/poly.c
index 6af59e9..3c93d0c 100644
--- a/src/poly.c
+++ b/src/poly.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include"general.h"
 #include"poly.h"
 #include<stdlib.h>
diff --git a/src/poly.h b/src/poly.h
index 2b37c92..33f3be8 100644
--- a/src/poly.h
+++ b/src/poly.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _POLY_H
 #define _POLY_H
 #include"io.h"
diff --git a/src/restore.c b/src/restore.c
index 2cc83bb..b526bd5 100644
--- a/src/restore.c
+++ b/src/restore.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include <stdio.h>
 #include <string.h>
 #include <stdlib.h>
diff --git a/src/restore.h b/src/restore.h
index 84c8747..821f5a2 100644
--- a/src/restore.h
+++ b/src/restore.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _H_RESTORE
 #define _H_RESTORE
 
diff --git a/src/sh.c b/src/sh.c
index 9cb623e..3f64939 100644
--- a/src/sh.c
+++ b/src/sh.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<math.h>
 #include<stdlib.h>
 #include "general.h"
diff --git a/src/sh.h b/src/sh.h
index dabece2..ae5cd3e 100644
--- a/src/sh.h
+++ b/src/sh.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _H_SH
 #define _H_SH
 #include "general.h"
diff --git a/src/shcomplex.c b/src/shcomplex.c
index 7d8c9d8..5dc6a97 100644
--- a/src/shcomplex.c
+++ b/src/shcomplex.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<math.h>
 #include<stdlib.h>
 #include<gsl/gsl_complex.h>
diff --git a/src/shcomplex.h b/src/shcomplex.h
index fdd0eb0..63c6af5 100644
--- a/src/shcomplex.h
+++ b/src/shcomplex.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _H_SH_COMPLEX
 #define _H_SH_COMPLEX
 #include "general.h"
diff --git a/src/shdiscover.c b/src/shdiscover.c
index 008d522..cf155ac 100644
--- a/src/shdiscover.c
+++ b/src/shdiscover.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include "general.h"
 #include "vertex.h"
 #include "initial_distribution.h"
diff --git a/src/snapshot.c b/src/snapshot.c
index 9dc23a9..370ce4c 100644
--- a/src/snapshot.c
+++ b/src/snapshot.c
@@ -1,3 +1,5 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
+/* vim: set ts=4 sts=4 sw=4 noet : */	
 #include<stdio.h>
 #include<general.h>
 #include<snapshot.h>
@@ -169,10 +171,7 @@
 static int mod_table[] = {0, 2, 1};
 
 
-char *base64_encode(const unsigned char *data,
-                    size_t input_length,
-                    size_t *output_length) {
-
+char *base64_encode(const unsigned char *data, size_t input_length, size_t *output_length) {
 	*output_length = 4 * ((input_length + 2) / 3);
 	int i,j;
 	char *encoded_data = malloc(*output_length);
@@ -180,29 +179,25 @@
 	
 	for (i = 0, j = 0; i < input_length;) {
 
-        	uint32_t octet_a = i < input_length ? (unsigned char)data[i++] : 0;
-	        uint32_t octet_b = i < input_length ? (unsigned char)data[i++] : 0;
-        	uint32_t octet_c = i < input_length ? (unsigned char)data[i++] : 0;
+       	uint32_t octet_a = i < input_length ? (unsigned char)data[i++] : 0;
+        uint32_t octet_b = i < input_length ? (unsigned char)data[i++] : 0;
+       	uint32_t octet_c = i < input_length ? (unsigned char)data[i++] : 0;
+        uint32_t triple = (octet_a << 0x10) + (octet_b << 0x08) + octet_c;
 
-	        uint32_t triple = (octet_a << 0x10) + (octet_b << 0x08) + octet_c;
-
-        	encoded_data[j++] = encoding_table[(triple >> 3 * 6) & 0x3F];
-        	encoded_data[j++] = encoding_table[(triple >> 2 * 6) & 0x3F];
-        	encoded_data[j++] = encoding_table[(triple >> 1 * 6) & 0x3F];
-        	encoded_data[j++] = encoding_table[(triple >> 0 * 6) & 0x3F];
+       	encoded_data[j++] = encoding_table[(triple >> 3 * 6) & 0x3F];
+       	encoded_data[j++] = encoding_table[(triple >> 2 * 6) & 0x3F];
+       	encoded_data[j++] = encoding_table[(triple >> 1 * 6) & 0x3F];
+       	encoded_data[j++] = encoding_table[(triple >> 0 * 6) & 0x3F];
 	}
 
 	for (i = 0; i < mod_table[input_length % 3]; i++)
-        	encoded_data[*output_length - 1 - i] = '=';
+       	encoded_data[*output_length - 1 - i] = '=';
 
 	return encoded_data;
 }
 
 
-unsigned char *base64_decode(const char *data,
-                             size_t input_length,
-                             size_t *output_length) {
-
+unsigned char *base64_decode(const char *data, size_t input_length, size_t *output_length) {
 	int i,j;
 	if (decoding_table == NULL) build_decoding_table();
 
@@ -216,20 +211,19 @@
 	if (decoded_data == NULL) return NULL;
 
 	for (i = 0, j = 0; i < input_length;) {
+       	uint32_t sextet_a = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]];
+       	uint32_t sextet_b = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]];
+   		uint32_t sextet_c = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]];
+       	uint32_t sextet_d = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]];
 
-        	uint32_t sextet_a = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]];
-        	uint32_t sextet_b = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]];
-       		uint32_t sextet_c = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]];
-        	uint32_t sextet_d = data[i] == '=' ? 0 & i++ : decoding_table[(int)data[i++]];
-
-        	uint32_t triple = (sextet_a << 3 * 6)
+       	uint32_t triple = (sextet_a << 3 * 6)
         	+ (sextet_b << 2 * 6)
         	+ (sextet_c << 1 * 6)
         	+ (sextet_d << 0 * 6);
 
-        	if (j < *output_length) decoded_data[j++] = (triple >> 2 * 8) & 0xFF;
-        	if (j < *output_length) decoded_data[j++] = (triple >> 1 * 8) & 0xFF;
-        	if (j < *output_length) decoded_data[j++] = (triple >> 0 * 8) & 0xFF;
+       	if (j < *output_length) decoded_data[j++] = (triple >> 2 * 8) & 0xFF;
+       	if (j < *output_length) decoded_data[j++] = (triple >> 1 * 8) & 0xFF;
+       	if (j < *output_length) decoded_data[j++] = (triple >> 0 * 8) & 0xFF;
     }
 	if(decoding_table !=NULL) free(decoding_table);
     return decoded_data;
@@ -241,7 +235,7 @@
     decoding_table = malloc(256);
 	int i;
     for (i = 0; i < 64; i++)
-        decoding_table[(unsigned char) encoding_table[i]] = i;
+		decoding_table[(unsigned char) encoding_table[i]] = i;
 }
 
 
diff --git a/src/snapshot.h b/src/snapshot.h
index c6d7186..e4642e9 100644
--- a/src/snapshot.h
+++ b/src/snapshot.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _H_SNAPSHOT
 #define _H_SNAPSHOT
 
diff --git a/src/spherical_trisurf.c b/src/spherical_trisurf.c
index 0669981..06a84f4 100644
--- a/src/spherical_trisurf.c
+++ b/src/spherical_trisurf.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdio.h>
 #include<math.h>
 #include "general.h"
diff --git a/src/spherical_trisurf_ff.c b/src/spherical_trisurf_ff.c
index 157b0e4..8a0902f 100644
--- a/src/spherical_trisurf_ff.c
+++ b/src/spherical_trisurf_ff.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdio.h>
 #include<math.h>
 #include "general.h"
diff --git a/src/stats.c b/src/stats.c
index 077781e..b63fecc 100644
--- a/src/stats.c
+++ b/src/stats.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include <stdio.h>
 #include <time.h>
 //#include <gsl/gsl_math.h>
diff --git a/src/stats.h b/src/stats.h
index 223a99b..10ee13a 100644
--- a/src/stats.h
+++ b/src/stats.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _H_STATS
 #define _H_STATS
 void gyration_eigen(ts_vesicle *vesicle, ts_double *l1, ts_double *l2, ts_double *l3);
diff --git a/src/timestep.c b/src/timestep.c
index 59ff8c6..9f30dda 100644
--- a/src/timestep.c
+++ b/src/timestep.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdlib.h>
 #include<stdio.h>
 #include<math.h>
diff --git a/src/timestep.h b/src/timestep.h
index 0d8dc74..21cb7bb 100644
--- a/src/timestep.h
+++ b/src/timestep.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _TIMESTEP_H
 #define _TIMESTEP_H
 ts_bool single_timestep(ts_vesicle *vesicle, ts_double *vmsr, ts_double *bfsr);
diff --git a/src/triangle.c b/src/triangle.c
index 7dd5a6e..da9d7a8 100644
--- a/src/triangle.c
+++ b/src/triangle.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdlib.h>
 #include<stdio.h>
 #include "general.h"
diff --git a/src/triangle.h b/src/triangle.h
index a1a0fd0..dd5280e 100644
--- a/src/triangle.h
+++ b/src/triangle.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _TRIANGLE_H
 #define _TRIANGLE_H
 
diff --git a/src/vertex.c b/src/vertex.c
index 3ae9fd1..59a6419 100644
--- a/src/vertex.c
+++ b/src/vertex.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdlib.h>
 #include<math.h>
 #include<string.h>
diff --git a/src/vertex.h b/src/vertex.h
index cca12ee..0eb8dd3 100644
--- a/src/vertex.h
+++ b/src/vertex.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _VERTEX_H
 #define _VERTEX_H
 
diff --git a/src/vertexmove.c b/src/vertexmove.c
index c552a87..b065cbb 100644
--- a/src/vertexmove.c
+++ b/src/vertexmove.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<stdlib.h>
 #include<math.h>
 #include "general.h"
diff --git a/src/vertexmove.h b/src/vertexmove.h
index c58ee64..e6a8f3c 100644
--- a/src/vertexmove.h
+++ b/src/vertexmove.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 
 ts_bool single_verticle_timestep(ts_vesicle *vesicle,ts_vertex *vtx,ts_double *rn);
 
diff --git a/src/vesicle.c b/src/vesicle.c
index 5fc51cc..4d9e5cd 100644
--- a/src/vesicle.c
+++ b/src/vesicle.c
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #include<general.h>
 #include "vesicle.h"
 #include "vertex.h"
diff --git a/src/vesicle.h b/src/vesicle.h
index 50a9e3e..e8f09fb 100644
--- a/src/vesicle.h
+++ b/src/vesicle.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _VESICLE_H
 #define _VESICLE_H
 

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