From 7e4c90363abd53adc84ccd44efa50757f4892e7c Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 21 Jun 2016 20:29:17 +0000
Subject: [PATCH] Removed accidentaly added spontaneous curvature settings.
---
python/trisurf/trisurf.py | 38 +++++++++++++++++++++++++++++++++++---
1 files changed, 35 insertions(+), 3 deletions(-)
diff --git a/python/trisurf/trisurf.py b/python/trisurf/trisurf.py
index 46a3624..57d300d 100644
--- a/python/trisurf/trisurf.py
+++ b/python/trisurf/trisurf.py
@@ -212,8 +212,40 @@
lines=0
f.close()
return lines
-
+
+ def tail(self,filename,n=2):
+ with open(filename,'r') as myfile:
+ lines=myfile.readlines()
+ return [lines[len(lines)-2].replace('\n',''),lines[len(lines)-1].replace('\n','')]
+
def read(self):
+ try:
+ lines=self.tail(self.fullname)
+ except:
+ return(False)
+ if len(lines)<2:
+ return(False)
+ #print (line)
+ fields=shlex.split(lines[0])
+ epoch1=fields[0]
+ n1=fields[1]
+
+ fields=shlex.split(lines[1])
+ epoch2=fields[0]
+ n2=fields[1]
+ try:
+ self.dT=int(epoch2)-int(epoch1)
+ self.last=n2
+ #print(epoch1)
+ #print(epoch2)
+ #print(self.dT)
+ #print(self.last)
+ self.startDate=os.path.getmtime(os.path.join(self.path,'.lock'))
+ except:
+ return(False)
+ return(True)
+
+ def read_old(self):
'''
Method read() reads the statistics if it exists. It sets local variable dT storing the time differential between two intervals of simulation (outer loops). It also stores last simulation loop and the start of the run.
'''
@@ -318,7 +350,7 @@
return int(status)
def isCompleted(self):
- if (int(self.tape.getValue("iterations"))==self.getLastIteration()+1):
+ if int(self.tape.getValue("iterations"))+int(self.tape.getValue("inititer"))==self.getLastIteration()+1:
return True
else:
return False
@@ -461,7 +493,7 @@
def getLastVTU(self):
- vtuidx=self.getLastIteration()
+ vtuidx=self.getLastIteration()-int(self.tape.getValue("inititer"))+1
if vtuidx<0:
return None
else:
--
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