From 7d44c8ef7ee873fe1d9787872cde1a7ace632c4c Mon Sep 17 00:00:00 2001 From: Samo Penic <samo.penic@gmail.com> Date: Sun, 19 Feb 2017 15:18:32 +0000 Subject: [PATCH] Librarization f trisurf. Maybe there are some (autogenerated) files that are missing. --- src/tape | 25 +++++++++++++++++++------ 1 files changed, 19 insertions(+), 6 deletions(-) diff --git a/src/tape b/src/tape index 2e8b8c7..f2edf02 100644 --- a/src/tape +++ b/src/tape @@ -1,6 +1,6 @@ ####### Vesicle definitions ########### # nshell is a number of divisions of dipyramid -nshell=5 +nshell=17 # dmax is the max. bond length (in units l_min) dmax=1.7 # dmin_interspecies in the min. dist. between different vertex species (in units l_min) @@ -14,7 +14,7 @@ # (pswitch=1: calc. p*dV energy contribution) pswitch = 0 # pressure difference: p_inside - p_outside (in units kT/l_min^3): -pressure=-10.0 +pressure=10.0 #Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol) constvolswitch=0 @@ -25,11 +25,13 @@ ####### Polymer (brush) definitions ########### # npoly is a number of polymers attached to npoly distinct vertices on vesicle -npoly=0 +npoly=400 # nmono is a number of monomers in each polymer -nmono=2 +nmono=10 # Spring constant between monomers of the polymer k_spring=800 +#set to 1 if half of the polymeres are inside the vesicle +internal_poly=1 ####### Filament (inside the vesicle) definitions ########### # nfil is a number of filaments inside the vesicle @@ -54,10 +56,10 @@ ####### Program Control ############ #how many MC sweeps between subsequent records of states to disk #200000 -mcsweeps=200 +mcsweeps=2000 #how many initial mcsweeps*inititer MC sweeps before recording to disk? #2 -inititer=10 +inititer=1 #how many records do you want on the disk iteration are there in a run? #10000 iterations=100 @@ -82,3 +84,14 @@ #max number of processes in distributed (voluntary) environment distributed_processes=50 #cuda options??? + + +#NirGov branch only! +#number of vertices with spontaneous curvature (integer) +number_of_vertices_with_c0=100 +#spontaneous curvature (float) +c0=0.5 +#energy of attraction of vertices with spontaneous curvature (float, positive value for attraction) +w=10.0 +#direct force on vesicles with spontaneous curvature (float) +F=2.0 -- Gitblit v1.9.3