From 7d44c8ef7ee873fe1d9787872cde1a7ace632c4c Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sun, 19 Feb 2017 15:18:32 +0000
Subject: [PATCH] Librarization f trisurf. Maybe there are some (autogenerated) files that are missing.

---
 src/io.h |   46 ++++++++++++++--------------------------------
 1 files changed, 14 insertions(+), 32 deletions(-)

diff --git a/src/io.h b/src/io.h
index 71390bc..6ca8331 100644
--- a/src/io.h
+++ b/src/io.h
@@ -1,40 +1,14 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _IO_H
 #define _IO_H
-
+#include <confuse.h>
 /** @ Global variables for I/O operations like filenames etc. */
 /*static char mastername[1024];
 static char prefixname[1024];
 static ts_bool restore=0;
 static char tape[1024]; */
 int force_from_tape;
-
-
-typedef struct {
-	long int nshell;
-	long int ncxmax;
-	long int ncymax;
-	long int nczmax;
-	long int npoly;
-	long int nmono;
-	long int nfil;
-	long int nfono;
-	long int R_nucleus;
-	long int pswitch;
-    	char *multiprocessing;
-   	long int brezveze0;
-    	long int brezveze1;
-    	long int brezveze2;
-    	ts_double xk0;
-	ts_double dmax;
-	ts_double stepsize;
-	ts_double kspring;
-	ts_double pressure;
-	long int iterations;
-	long int inititer;
-	long int mcsweeps;
-	long int quiet;
-} ts_tape;
-
+char tapetxt[128000]; //stores text file of the tape
 typedef struct{
 	ts_int force_from_tape;
 	ts_int reset_iteration_count;
@@ -42,6 +16,9 @@
     char output_fullfilename[1024]; //name of the master file
     char dump_fullfilename[1024]; //name of the dump file
     char tape_fullfilename[1024]; //name of the tape file
+    char tape_templatefull[1024]; //name of the tape template file
+    char tape_opts[1000]; //commandline tape options
+    char dump_from_vtk[1024];
 } ts_args;
 
 ts_args command_line_args;
@@ -95,11 +72,16 @@
  *	@param *text is a description line (max. 255 characters) to be included in the file
  */
 ts_bool write_vertex_vtk_file(ts_vesicle *vesicle,ts_char *filename, ts_char *text);
-ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno);
+ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno, ts_cluster_list *cstlist);
 ts_bool write_master_xml_file(ts_char *filename);
-ts_tape *parsetape(char *filename);
-ts_bool tape_free(ts_tape *tape);
+ts_bool write_pov_file(ts_vesicle *vesicle, char *filename);
 
+ts_tape *parsetape(char *filename);
+ts_tape *parsetapebuffer(char *buffer);
+ts_bool tape_free(ts_tape *tape);
+ts_bool getcmdline_tape(cfg_t *cfg, char *opts);
+ts_bool cmdline_to_tape(cfg_t *cfg, char *key, char *val);
+ts_bool print_help(FILE *fd);
 ts_bool dump_state(ts_vesicle *vesicle, ts_uint iteration);
 ts_vesicle *restore_state(ts_uint *iteration);
 #endif

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