From 7b0c077e18af45b1312c35aa52efb0211d1378c5 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Thu, 11 Sep 2014 10:57:05 +0000
Subject: [PATCH] Command line tape options, directories and files are parsed correctly. Command line tape works.

---
 src/tape |   27 +++++++++++++++++++++------
 1 files changed, 21 insertions(+), 6 deletions(-)

diff --git a/src/tape b/src/tape
index ac316ef..bb4b1db 100644
--- a/src/tape
+++ b/src/tape
@@ -3,6 +3,8 @@
 nshell=17
 # dmax is the max. bond length (in units l_min)
 dmax=1.7
+# dmin_interspecies in the min. dist. between different vertex species (in units l_min)
+dmin_interspecies=1.2
 # bending rigidity of the membrane (in units kT)
 xk0=10.0
 # max step size (in units l_min)
@@ -14,9 +16,14 @@
 # pressure difference: p_inside - p_outside (in units kT/l_min^3):
 pressure=0.0
 
+#Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol)
+constvolswitch=2
+constvolprecision=1e-14
+
+
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
-npoly=0
+npoly=5
 # nmono is a number of monomers in each polymer
 nmono=10
 # Spring constant between monomers of the polymer
@@ -24,14 +31,15 @@
 
 ####### Filament (inside the vesicle) definitions ###########
 # nfil is a number of filaments inside the vesicle
-nfil=1
+nfil=0
 # nfono is a number of monomers in each filament
 nfono=300
-# Spring constant between monomers of the filament
+# Persistence lenght of the filaments (in units l_min)
+xi=0
 
 ####### Nucleus (inside the vesicle) ###########
 # Radius of an impenetrable hard sphere inside the vesicle
-R_nucleus=5
+R_nucleus=0
 
 #######  Cell definitions ############
 nxmax=60
@@ -41,13 +49,20 @@
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
-mcsweeps=300
+#200000
+mcsweeps=20
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
+#2
 inititer=0
 #how many records do you want on the disk iteration are there in a run?
-iterations=300
+#10000
+iterations=100
 
 
+###### Spherical harmonics ###########
+# If 0 then spherical harmonics are not calculated at all.
+spherical_harmonics_coefficients=21
+
 #shut up if we are using cluster!!!
 quiet=false
 

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