From 7522b886602380764ce76f1d2244fad11bd1054f Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Fri, 08 Mar 2019 19:56:03 +0000
Subject: [PATCH] Full write of constant volume plugin

---
 src/tape |   28 ++++++++++++++++++++++------
 1 files changed, 22 insertions(+), 6 deletions(-)

diff --git a/src/tape b/src/tape
index fe611f8..42e22ea 100644
--- a/src/tape
+++ b/src/tape
@@ -12,7 +12,7 @@
 
 # Pressure calculations
 # (pswitch=1: calc. p*dV energy contribution)
-pswitch = 0
+pswitch = 1
 # pressure difference: p_inside - p_outside (in units kT/l_min^3):
 pressure=-10.0
 
@@ -23,13 +23,20 @@
 #Constant area constraint (0 disable constant area, 2 enable constant area with epsarea)
 constareaswitch=0
 
+
+#Stretching
+stretchswitch=1
+xkA0=1.0
+
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
 npoly=0
 # nmono is a number of monomers in each polymer
-nmono=2
+nmono=10
 # Spring constant between monomers of the polymer
 k_spring=800
+#set to 1 if half of the polymeres are inside the vesicle
+internal_poly=1
 
 ####### Filament (inside the vesicle) definitions ###########
 # nfil is a number of filaments inside the vesicle
@@ -54,7 +61,7 @@
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
 #200000
-mcsweeps=2000
+mcsweeps=200
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
 #2
 inititer=0
@@ -84,11 +91,20 @@
 #cuda options???
 
 
-#NirGov branch only!
 #number of vertices with spontaneous curvature (integer)
-number_of_vertices_with_c0=300
-#spontaneous curvature (float)
+number_of_vertices_with_c0=100
+#c0/2 is spontaneous curvature. c0 is used as (c1+c1-c0)^2 in energy term (float)
 c0=0.5
 #energy of attraction of vertices with spontaneous curvature (float, positive value for attraction)
 w=10.0
+#direct force on vesicles with spontaneous curvature (float)
+F=2.0
 
+
+
+#plane confinement
+plane_confinement_switch=1
+#final plane distance (float in lmin)
+plane_d=10
+#plane to vesicle repulsion force while closing
+plane_F=10

--
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