From 719c9febac2eaff9483fda487b57684afbb59bb2 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Wed, 05 Mar 2014 16:47:50 +0000
Subject: [PATCH] dont know

---
 src/frame.c |   74 ++++++++++++++++++++++---------------
 1 files changed, 44 insertions(+), 30 deletions(-)

diff --git a/src/frame.c b/src/frame.c
index faa1db8..d2d7e10 100644
--- a/src/frame.c
+++ b/src/frame.c
@@ -3,56 +3,70 @@
 #include "cell.h"
 #include "frame.h"
 ts_bool centermass(ts_vesicle *vesicle){
-    ts_uint i, n=vesicle->vlist->n;
+    ts_uint i,j, n=vesicle->vlist->n;
     ts_vertex **vtx=vesicle->vlist->vtx;
     vesicle->cm[0]=0;
     vesicle->cm[1]=0;
     vesicle->cm[2]=0;
     for(i=0;i<n;i++){
-        vesicle->cm[0]+=vtx[i]->data->x;
-        vesicle->cm[1]+=vtx[i]->data->y;
-        vesicle->cm[2]+=vtx[i]->data->z; 
+        vesicle->cm[0]+=vtx[i]->x;
+        vesicle->cm[1]+=vtx[i]->y;
+        vesicle->cm[2]+=vtx[i]->z; 
     } 
     vesicle->cm[0]/=(ts_float)n;
     vesicle->cm[1]/=(ts_float)n;
     vesicle->cm[2]/=(ts_float)n;
+
+    for(i=0;i<n;i++){
+        vtx[i]->x-=vesicle->cm[0];
+        vtx[i]->y-=vesicle->cm[1];
+        vtx[i]->z-=vesicle->cm[2]; 
+    } 
+
+	for(i=0;i<vesicle->poly_list->n;i++){
+		for(j=0;j<vesicle->poly_list->poly[i]->vlist->n;j++){
+			vesicle->poly_list->poly[i]->vlist->vtx[j]->x-=vesicle->cm[0];
+			vesicle->poly_list->poly[i]->vlist->vtx[j]->y-=vesicle->cm[1];
+			vesicle->poly_list->poly[i]->vlist->vtx[j]->z-=vesicle->cm[2];
+		}
+    }
+
+
+    vesicle->cm[0]=0;
+    vesicle->cm[1]=0;
+    vesicle->cm[2]=0;
+
     return TS_SUCCESS;
 }
 
 ts_bool cell_occupation(ts_vesicle *vesicle){
-    ts_uint i,cellidx, n=vesicle->vlist->n;
-    ts_double shift;
-    ts_double dcell;
-    shift=(ts_double) vesicle->clist->ncmax[0]/2;
-    dcell=1.0/(1.0 + vesicle->stepsize);
+    ts_uint i,j,cellidx, n=vesicle->vlist->n;
+    //ts_double shift;
+    //ts_double dcell;
+    //shift=(ts_double) vesicle->clist->ncmax[0]/2;
+    //dcell=1.0/(1.0 + vesicle->stepsize);
+    //`fprintf(stderr, "Bil sem tu\n"); 
 
     cell_list_cell_occupation_clear(vesicle->clist);
     for(i=0;i<n;i++){
     cellidx=vertex_self_avoidance(vesicle, vesicle->vlist->vtx[i]);
-    vesicle->vlist->vtx[i]->data->cell=vesicle->clist->cell[cellidx];
+//	already done in cell_add_vertex
+//    vesicle->vlist->vtx[i]->cell=vesicle->clist->cell[cellidx];
 
     cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->vlist->vtx[i]);
-
-  //  if(ncx > vesicle->clist.ncmax[0]) vesicle->clist.ncmax[0]=ncx;
-  //  if(ncy > vesicle->clist.ncmax[1]) vesicle->clist.ncmax[1]=ncy;
-  //  if(ncz > vesicle->clist.ncmax[2]) vesicle->clist.ncmax[2]=ncz;
     }
+
+    for(i=0;i<vesicle->poly_list->n;i++){
+	for(j=0;j<vesicle->poly_list->poly[i]->vlist->n;j++){
+    	cellidx=vertex_self_avoidance(vesicle, vesicle->poly_list->poly[i]->vlist->vtx[j]);
+    	cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->poly_list->poly[i]->vlist->vtx[j]);
+	}
+    }
+
+    
+
     //fprintf(stderr, "Bil sem tu\n"); 
-
-
-/* This was already done in previous for loop.... Have I gained some time? 
-
-
-    for(i=0;i<vesicle->clist.ncmax[0]*vesicle->clist.ncmax[1]*vesicle->clist.ncmax[2];i++){
-        vesicle->clist.cell[i].nvertex=0;
-        for(j=0;j<vesicle->vlist.n;j++){
-            //add_vertextocell;
-            //add_vertextomonomer;
-        }
-    }
-
-*/
-	if(dcell);
-	if(shift);
+	//if(dcell);
+	//if(shift);
     return TS_SUCCESS;
 }

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