From 69a174c6050ac0b88b8add7ffc19cce38f2170f9 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sun, 03 Jul 2016 20:53:35 +0000
Subject: [PATCH] Prepared skeleton for cluster counting routines

---
 src/general.h |   27 +++++++++++++++++++++++++++
 1 files changed, 27 insertions(+), 0 deletions(-)

diff --git a/src/general.h b/src/general.h
index 393eafe..5189c23 100644
--- a/src/general.h
+++ b/src/general.h
@@ -1,3 +1,4 @@
+/* vim: set ts=4 sts=4 sw=4 noet : */
 #ifndef _GENERAL_H
 #define _GENERAL_H
 
@@ -259,6 +260,9 @@
 	long int nfil;
 	long int nfono;
 	long int R_nucleus;
+	ts_double R_nucleusX;
+	ts_double R_nucleusY;
+	ts_double R_nucleusZ;
 	long int pswitch;
     long int constvolswitch;
     long int constareaswitch;
@@ -306,9 +310,25 @@
 	ts_int pswitch;
     ts_tape *tape;
 	ts_double R_nucleus;
+	ts_double R_nucleusX;
+	ts_double R_nucleusY;
+	ts_double R_nucleusZ;
+	ts_double nucleus_center[3];
     ts_double area;
 } ts_vesicle;
 
+
+
+typedef struct{
+	ts_uint nvtx;
+	ts_uint idx;
+	ts_vertex **vtx;
+} ts_cluster;
+
+typedef struct{
+	ts_uint n;
+	ts_cluster **cluster;
+} ts_cluster_list;
 
 
 /* GLOBAL VARIABLES */
@@ -338,4 +358,11 @@
 #define VTX(n) &(vlist->vtx[n])
 #define VTX_DATA(n) vlist->vtx[n].data
 
+
+/* FOR PID GENERATION ROUTINE */
+#define CPF_CLOEXEC 1
+
+int createPidFile(const char *progName, const char *pidFile, int flags);
+
+int lockRegion(int fd, int type, int whence, int start, int len);
 #endif

--
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