From 699ac44864e75549fb3d238d36f0bc1dd645ddac Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Mon, 21 May 2018 13:52:58 +0000
Subject: [PATCH] Fixes in a0 calculation and calculation of stretching energy in vertexmove
---
src/main.c | 18 ++++++++++++++++--
1 files changed, 16 insertions(+), 2 deletions(-)
diff --git a/src/main.c b/src/main.c
index 36da13a..3f91f43 100644
--- a/src/main.c
+++ b/src/main.c
@@ -30,6 +30,9 @@
ts_tape *tape;
ts_uint start_iteration=0;
force_from_tape=0;
+ /* Area and volume for constant area and constant volume are initialized to be zero */
+ A0=0;
+ V0=0;
/* create lock file */
createPidFile("ts_trisurf",".lock",0);
parse_args(argv,argc); // sets global variable command_line_args (defined in io.h)
@@ -45,13 +48,20 @@
ts_fprintf(stdout,"**** Restoring vesicle from VTK points list ****\n");
ts_fprintf(stdout,"************************************************\n\n");
vesicle = parseDump(command_line_args.dump_from_vtk);
+// write_vertex_xml_file(vesicle,9999); // here you can test if restoration and rewritting results in the same dump file. Only the date od creation of dump file must differ.
tape = vesicle->tape;
+ int arguments_no;
FILE *fd=fopen(".status","r");
if(fd!=NULL){
- fscanf(fd,"%u", &start_iteration);
+ arguments_no=fscanf(fd,"%u", &start_iteration);
+ if(arguments_no==0){
+ ts_fprintf(stdout,"No information of start iteration in .status file\n");
+ }
fclose(fd);
- start_iteration++;
+ start_iteration++;
}
+ else
+ ts_fprintf(stdout,"No .status file. The iteration count will start from 0\n");
/* Here you should read new tape file, reassign some values in vertex from the tape and assign read tape to vesicle->tape */
// tape=parsetape(command_line_args.tape_fullfilename);
// vesicle=vtk2vesicle(command_line_args.dump_from_vtk,tape);
@@ -116,7 +126,11 @@
}
}
}
+ //printf("nucleus coords: %.17e %.17e %.17e\n",vesicle->nucleus_center[0], vesicle->nucleus_center[1], vesicle->nucleus_center[2]);
+// write_vertex_xml_file(vesicle,0);
+// exit(1);
+ //write_vertex_xml_file(vesicle,1000);
run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration);
write_master_xml_file(command_line_args.output_fullfilename);
write_dout_fcompat_file(vesicle,"dout");
--
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