From 6705af6d3d02e47a797c53146666a1d168e1aefc Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Thu, 06 Mar 2014 08:56:37 +0000
Subject: [PATCH] Merge branch 'trisurf-polyel'. It is the most debugged version. True, without polymeres dump may not work yet, still, from scratch with polymeres set to 0, there should be minimal time penalty.

---
 src/bond.c |   13 ++++++-------
 1 files changed, 6 insertions(+), 7 deletions(-)

diff --git a/src/bond.c b/src/bond.c
index 1478720..a348d61 100644
--- a/src/bond.c
+++ b/src/bond.c
@@ -15,8 +15,8 @@
     if(vtx1==NULL || vtx2==NULL) return NULL;
     /* Verify if the bond already exists... Don't do multiple bonds */
     for(i=0;i<blist->n;i++){
-       if((blist->bond[i]->data->vtx1==vtx1 || blist->bond[i]->data->vtx1==vtx2)
-        &&(blist->bond[i]->data->vtx2==vtx1 || blist->bond[i]->data->vtx2==vtx2))
+       if((blist->bond[i]->vtx1==vtx1 || blist->bond[i]->vtx1==vtx2)
+        &&(blist->bond[i]->vtx2==vtx1 || blist->bond[i]->vtx2==vtx2))
         return blist->bond[i];
     }
 	blist->n++;
@@ -24,12 +24,12 @@
 	if(blist->bond==NULL) fatal("Cannot reallocate memory for additional **ts_bond.",100);
     blist->bond[blist->n-1]=(ts_bond *)malloc(sizeof(ts_bond));
     if(blist->bond[blist->n-1]==NULL) fatal("Cannot allocate memory for additional *ts_bond.",100);
-    blist->bond[blist->n-1]->data=(ts_bond_data *)malloc(sizeof(ts_bond_data));
     
 	//NOW insert vertices into data!	
-	blist->bond[blist->n - 1]->data->vtx1=vtx1;	
-	blist->bond[blist->n - 1]->data->vtx2=vtx2;
-
+	blist->bond[blist->n - 1]->vtx1=vtx1;	
+	blist->bond[blist->n - 1]->vtx2=vtx2;
+	blist->bond[blist->n - 1]->tainted=0;
+	blist->bond[blist->n - 1]->idx=blist->n-1;
     //Should we calculate bond length NOW?
 	
 	return blist->bond[blist->n-1];
@@ -38,7 +38,6 @@
 ts_bool bond_list_free(ts_bond_list *blist){
     ts_uint i;
     for(i=0;i<blist->n;i++){
-    free(blist->bond[i]->data);
     free(blist->bond[i]);
     }
     free(blist->bond);

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