From 624f819d40ca2204b0a128970dcd3d9ca7e17699 Mon Sep 17 00:00:00 2001
From: mihaf <miha.fosnaric@gmail.com>
Date: Fri, 14 Mar 2014 09:36:05 +0000
Subject: [PATCH] Added filaments inside the vesicle. TODO: tape etc.

---
 src/tape |   28 +++++++++++++++++++++-------
 1 files changed, 21 insertions(+), 7 deletions(-)

diff --git a/src/tape b/src/tape
index 9a44ef3..38871bd 100644
--- a/src/tape
+++ b/src/tape
@@ -1,20 +1,34 @@
 ####### Vesicle definitions ###########
 # nshell is a number of divisions of dipyramid
 nshell=17
-# dmax is the max. bond length 
+# dmax is the max. bond length (in units l_min)
 dmax=1.7
-# bending rigidity of the membrane 
-xk0=25.0
-# max step size 
+# bending rigidity of the membrane (in units kT)
+xk0=10.0
+# max step size (in units l_min)
 stepsize=0.15
 
-####### Polymer definitions ###########
+# Pressure calculations
+# (pswitch=1: calc. p*dV energy contribution)
+pswitch = 0
+# pressure difference: p_inside - p_outside (in units kT/l_min^3):
+pressure=0.0
+
+####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
-npoly=30
+npoly=0
 # nmono is a number of monomers in each polymer
 nmono=10
 # Spring constant between monomers of the polymer
 k_spring=800
+
+####### Filament (inside the vesicle) definitions ###########
+# npoly is a number of polymers attached to npoly distinct vertices on vesicle
+nfil=0
+# nmono is a number of monomers in each filament
+nfono=10
+# Spring constant between monomers of the filament
+k_sfring=800
 
 #######  Cell definitions ############
 nxmax=60
@@ -28,7 +42,7 @@
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
 inititer=1
 #how many records do you want on the disk iteration are there in a run?
-iterations=10000
+iterations=1000
 
 
 #shut up if we are using cluster!!!

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