From 621830b501728adb038b37281bd23d678a3c053d Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Thu, 07 Jun 2012 12:15:54 +0000
Subject: [PATCH] Moved Ylmi into vertex_ts datastructure, since it is vertex related

---
 src/vesicle.c |   35 +++++++++++++++++++++++++++--------
 1 files changed, 27 insertions(+), 8 deletions(-)

diff --git a/src/vesicle.c b/src/vesicle.c
index e294f93..e1cc21d 100644
--- a/src/vesicle.c
+++ b/src/vesicle.c
@@ -4,34 +4,53 @@
 #include "triangle.h"
 #include "bond.h"
 #include "cell.h"
-
+#include "stdlib.h"
 
 ts_vesicle *init_vesicle(ts_uint N, ts_uint ncmax1, ts_uint ncmax2, ts_uint
 ncmax3, ts_double stepsize){
-    ts_vesicle *vesicle;
+    ts_vesicle *vesicle=(ts_vesicle *)malloc(sizeof(ts_vesicle));
     vesicle->vlist=init_vertex_list(N);
     vesicle->blist=init_bond_list();
     vesicle->tlist=init_triangle_list();
     vesicle->clist=init_cell_list(ncmax1, ncmax2, ncmax3, stepsize);
-    return TS_SUCCESS;
+    return vesicle;
 }
 
 ts_bool vesicle_translate(ts_vesicle *vesicle,ts_double x, ts_double y, ts_double z){
 	ts_uint i;
-	ts_vertex *vtx=vesicle->vlist->vertex;
+	ts_vertex **vtx=vesicle->vlist->vtx;
 	ts_uint nn=vesicle->vlist->n;
 	for(i=0;i<nn;i++){
-		vtx[i]->data->x+=x;
-		vtx[i]->data->y+=y;
-		vtx[i]->data->z+=z;
+		vtx[i]->x+=x;
+		vtx[i]->y+=y;
+		vtx[i]->z+=z;
 	}
 	return TS_SUCCESS;
 }
 
 ts_bool vesicle_free(ts_vesicle *vesicle){
-    vertex_list_free(vesicle->vlist);
+    vtx_list_free(vesicle->vlist);
     bond_list_free(vesicle->blist);
     triangle_list_free(vesicle->tlist);
     cell_list_free(vesicle->clist);
+    free(vesicle);
+    return TS_SUCCESS;
+}
+
+ts_bool vesicle_volume(ts_vesicle *vesicle){
+    ts_double volume;
+    ts_double vol;
+    ts_uint i;
+    ts_triangle **tria=vesicle->tlist->tria;
+    volume=0;
+    for(i=0; i<vesicle->tlist->n;i++){
+        vol=(tria[i]->vertex[0]->x+ tria[i]->vertex[1]->x + tria[i]->vertex[2]->x) * tria[i]->xnorm + 
+       (tria[i]->vertex[0]->y+ tria[i]->vertex[1]->y + tria[i]->vertex[2]->y) * tria[i]->ynorm + 
+    (tria[i]->vertex[0]->z+ tria[i]->vertex[1]->z + tria[i]->vertex[2]->z) *
+tria[i]->znorm;
+    volume=volume-vol/18.0;
+    }
+
+    vesicle->volume=volume;
     return TS_SUCCESS;
 }

--
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