From 5eefcc281fda031d322599fd7094da4fc8450948 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 25 Sep 2018 13:55:53 +0000
Subject: [PATCH] Debugged

---
 src/tape |   30 +++++++++++++++++++++++++-----
 1 files changed, 25 insertions(+), 5 deletions(-)

diff --git a/src/tape b/src/tape
index 69fd056..83b9c27 100644
--- a/src/tape
+++ b/src/tape
@@ -25,9 +25,9 @@
 
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
-npoly=800
+npoly=0
 # nmono is a number of monomers in each polymer
-nmono=6
+nmono=10
 # Spring constant between monomers of the polymer
 k_spring=800
 #set to 1 if half of the polymeres are inside the vesicle
@@ -39,7 +39,7 @@
 # nfono is a number of monomers in each filament
 nfono=3
 # Persistence lenght of the filaments (in units l_min)
-xi=0
+xi=100
 
 ####### Nucleus (inside the vesicle) ###########
 # Radius of an impenetrable hard sphere inside the vesicle
@@ -56,10 +56,10 @@
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
 #200000
-mcsweeps=200
+mcsweeps=2000
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
 #2
-inititer=10
+inititer=1
 #how many records do you want on the disk iteration are there in a run?
 #10000
 iterations=100
@@ -71,6 +71,8 @@
 
 #shut up if we are using cluster!!!
 quiet=false
+ 
+
 
 #what type of multiprocessing? (*none, smp, cluster, distributed, cuda, auto)
 #currently only none makes sense.
@@ -82,3 +84,21 @@
 #max number of processes in distributed (voluntary) environment
 distributed_processes=50
 #cuda options???
+
+
+#number of vertices with spontaneous curvature (integer)
+number_of_vertices_with_c0=100
+#c0/2 is spontaneous curvature. c0 is used as (c1+c1-c0)^2 in energy term (float)
+c0=0.5
+#energy of attraction of vertices with spontaneous curvature (float, positive value for attraction)
+w=10.0
+#direct force on vesicles with spontaneous curvature (float)
+F=2.0
+
+
+#plane confinement
+plane_confinement_switch=1
+#final plane distance (float in lmin)
+plane_d=10
+#plane to vesicle repulsion force while closing
+plane_F=0

--
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