From 58230a2591414fb38b9ec8d3a76439b290cb0a6f Mon Sep 17 00:00:00 2001
From: mihaf <miha.fosnaric@gmail.com>
Date: Tue, 18 Mar 2014 13:09:23 +0000
Subject: [PATCH] Adding ending energy to filaments. In progress. Continue in single_filament_vertex_move

---
 src/tape |   37 +++++++++++++++++++++++++++----------
 1 files changed, 27 insertions(+), 10 deletions(-)

diff --git a/src/tape b/src/tape
index c13a5f5..ac316ef 100644
--- a/src/tape
+++ b/src/tape
@@ -1,20 +1,37 @@
 ####### Vesicle definitions ###########
 # nshell is a number of divisions of dipyramid
-nshell=10
-# dmax is the max. bond length 
+nshell=17
+# dmax is the max. bond length (in units l_min)
 dmax=1.7
-# bending rigidity of the membrane 
-xk0=25.0
-# max step size 
+# bending rigidity of the membrane (in units kT)
+xk0=10.0
+# max step size (in units l_min)
 stepsize=0.15
 
-####### Polymer definitions ###########
+# Pressure calculations
+# (pswitch=1: calc. p*dV energy contribution)
+pswitch = 0
+# pressure difference: p_inside - p_outside (in units kT/l_min^3):
+pressure=0.0
+
+####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
-npoly=30
+npoly=0
 # nmono is a number of monomers in each polymer
 nmono=10
 # Spring constant between monomers of the polymer
 k_spring=800
+
+####### Filament (inside the vesicle) definitions ###########
+# nfil is a number of filaments inside the vesicle
+nfil=1
+# nfono is a number of monomers in each filament
+nfono=300
+# Spring constant between monomers of the filament
+
+####### Nucleus (inside the vesicle) ###########
+# Radius of an impenetrable hard sphere inside the vesicle
+R_nucleus=5
 
 #######  Cell definitions ############
 nxmax=60
@@ -24,11 +41,11 @@
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
-mcsweeps=2000
+mcsweeps=300
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
-inititer=1
+inititer=0
 #how many records do you want on the disk iteration are there in a run?
-iterations=3000
+iterations=300
 
 
 #shut up if we are using cluster!!!

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