From 58230a2591414fb38b9ec8d3a76439b290cb0a6f Mon Sep 17 00:00:00 2001
From: mihaf <miha.fosnaric@gmail.com>
Date: Tue, 18 Mar 2014 13:09:23 +0000
Subject: [PATCH] Adding ending energy to filaments. In progress. Continue in single_filament_vertex_move

---
 src/io.h |   58 +++++++++++++++++++++++++++++++++++++++++++++++++++++++---
 1 files changed, 55 insertions(+), 3 deletions(-)

diff --git a/src/io.h b/src/io.h
index a0d27c6..71390bc 100644
--- a/src/io.h
+++ b/src/io.h
@@ -1,6 +1,55 @@
 #ifndef _IO_H
 #define _IO_H
 
+/** @ Global variables for I/O operations like filenames etc. */
+/*static char mastername[1024];
+static char prefixname[1024];
+static ts_bool restore=0;
+static char tape[1024]; */
+int force_from_tape;
+
+
+typedef struct {
+	long int nshell;
+	long int ncxmax;
+	long int ncymax;
+	long int nczmax;
+	long int npoly;
+	long int nmono;
+	long int nfil;
+	long int nfono;
+	long int R_nucleus;
+	long int pswitch;
+    	char *multiprocessing;
+   	long int brezveze0;
+    	long int brezveze1;
+    	long int brezveze2;
+    	ts_double xk0;
+	ts_double dmax;
+	ts_double stepsize;
+	ts_double kspring;
+	ts_double pressure;
+	long int iterations;
+	long int inititer;
+	long int mcsweeps;
+	long int quiet;
+} ts_tape;
+
+typedef struct{
+	ts_int force_from_tape;
+	ts_int reset_iteration_count;
+    char path[1024]; //path where all files should be added
+    char output_fullfilename[1024]; //name of the master file
+    char dump_fullfilename[1024]; //name of the dump file
+    char tape_fullfilename[1024]; //name of the tape file
+} ts_args;
+
+ts_args command_line_args;
+
+ts_bool parse_args(int argc, char **argv);
+
+
+
 /** @brief Prints the position of vertices for the whole list
  *  
  *  The function is meant more or less as a debug tool, but can be used in production
@@ -46,8 +95,11 @@
  *	@param *text is a description line (max. 255 characters) to be included in the file
  */
 ts_bool write_vertex_vtk_file(ts_vesicle *vesicle,ts_char *filename, ts_char *text);
+ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno);
+ts_bool write_master_xml_file(ts_char *filename);
+ts_tape *parsetape(char *filename);
+ts_bool tape_free(ts_tape *tape);
 
-ts_bool parsetape(ts_vesicle *vesicle,ts_uint *iterations);
-
-
+ts_bool dump_state(ts_vesicle *vesicle, ts_uint iteration);
+ts_vesicle *restore_state(ts_uint *iteration);
 #endif

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