From 555fd8b3ff5c121d9faff1000d664fc653c912bf Mon Sep 17 00:00:00 2001
From: mihaf <miha.fosnaric@gmail.com>
Date: Wed, 02 Apr 2014 09:43:19 +0000
Subject: [PATCH] In cell.c changed comparison between vertices in a cell from idx to pointer (to avoid bug that two distinct vertices with same idx are not checked for proximity).

---
 src/initial_distribution.c |    7 ++++++-
 1 files changed, 6 insertions(+), 1 deletions(-)

diff --git a/src/initial_distribution.c b/src/initial_distribution.c
index 3c27e55..0587d18 100644
--- a/src/initial_distribution.c
+++ b/src/initial_distribution.c
@@ -41,7 +41,9 @@
 
 	vesicle=initial_distribution_dipyramid(tape->nshell,tape->ncxmax,tape->ncymax,tape->nczmax,tape->stepsize);
 	// Nucleus:
-	vesicle->R_nucleus=tape->R_nucleus;
+	vesicle->R_nucleus=tape->R_nucleus*tape->R_nucleus;
+
+	vesicle->clist->dmin_interspecies = tape->dmin_interspecies*tape->dmin_interspecies;
 
 	//Initialize grafted polymers (brush):
 	vesicle->poly_list=init_poly_list(tape->npoly,tape->nmono, vesicle->vlist, vesicle);
@@ -69,6 +71,9 @@
 		}
 	}
 
+	for(i=0;i<vesicle->filament_list->n;i++){
+		vertex_list_assign_id(vesicle->filament_list->poly[i]->vlist,TS_ID_FILAMENT);
+	}
 
 //	vesicle->spring_constant=tape->kspring;
 //	poly_assign_spring_const(vesicle);

--
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