From 4df6ed05246cf8bc9fe0cb0c8766ebc368d2f512 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sat, 09 Mar 2019 19:33:51 +0000
Subject: [PATCH] Added stretching energy plugin
---
src/plugins/plane_confinement.c | 23 ++++++++++++++++++++++-
1 files changed, 22 insertions(+), 1 deletions(-)
diff --git a/src/plugins/plane_confinement.c b/src/plugins/plane_confinement.c
index 6cf052c..b290052 100644
--- a/src/plugins/plane_confinement.c
+++ b/src/plugins/plane_confinement.c
@@ -2,6 +2,7 @@
#include "general.h"
#include "vertex.h"
#include "cell.h"
+#include <math.h>
char plugin_name[] = "Plane confimenent";
char plugin_description[]= "Confines vesicle between two planes d/2 above z=0 and d/2 below z=0. The plates squeeze vesicle with some predefined force.";
char plugin_author[] = "SAMO PENIC";
@@ -9,6 +10,7 @@
ts_plugin_details *init (){
ts_plugin_details *details=(ts_plugin_details *)calloc(1,sizeof(ts_plugin_details));
details->name = plugin_name;
+// details->data = (void *)calloc(1,sizeof(ts_double));
return details;
}
@@ -20,7 +22,26 @@
return TS_FAIL;
}
}
-
return TS_SUCCESS;
}
+
+ts_double vm_energy_after_execute(ts_vesicle *vesicle, ts_vertex *vtx, ts_vertex *backupvtx){
+// plane confinement energy due to compressing force
+ ts_double delta_energy=0;
+ if(vesicle->tape->plane_confinement_switch){
+ if(vesicle->confinement_plane.force_switch){
+ //substract old energy
+ if(abs(vesicle->tape->plane_d/2.0-vesicle->confinement_plane.z_max)>1e-10) {
+ delta_energy-=vesicle->tape->plane_F / pow(vesicle->confinement_plane.z_max-backupvtx[0].z,2);
+ delta_energy+=vesicle->tape->plane_F / pow(vesicle->confinement_plane.z_max-vtx->z,2);
+ }
+ if(abs(-vesicle->tape->plane_d/2.0-vesicle->confinement_plane.z_min)>1e-10) {
+ delta_energy-=vesicle->tape->plane_F / pow(vesicle->confinement_plane.z_min-backupvtx[0].z,2);
+ delta_energy+=vesicle->tape->plane_F / pow(vesicle->confinement_plane.z_min-vtx->z,2);
+ }
+ }
+ }
+ return delta_energy;
+
+}
--
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