From 4ca00dc38c72f67dc714fbb45b3006afec097c9c Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sat, 19 Oct 2019 13:26:56 +0000
Subject: [PATCH] Compression except of trisurf header is done. Preparing for decompression

---
 src/tape |   28 +++++++++++++++++++++-------
 1 files changed, 21 insertions(+), 7 deletions(-)

diff --git a/src/tape b/src/tape
index 8f38645..2e0edfd 100644
--- a/src/tape
+++ b/src/tape
@@ -23,15 +23,20 @@
 #Constant area constraint (0 disable constant area, 2 enable constant area with epsarea)
 constareaswitch=0
 
+
+#Stretching
+stretchswitch=1
+xkA0=1.0
+
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
 npoly=0
 # nmono is a number of monomers in each polymer
-nmono=10
+nmono=20
 # Spring constant between monomers of the polymer
 k_spring=800
 #set to 1 if half of the polymeres are inside the vesicle
-internal_poly=1
+internal_poly=0
 
 ####### Filament (inside the vesicle) definitions ###########
 # nfil is a number of filaments inside the vesicle
@@ -48,18 +53,18 @@
 R_nucleusY=0
 R_nucleusZ=0
 #######  Cell definitions ############
-nxmax=60
-nymax=60
-nzmax=60
+nxmax=100
+nymax=100
+nzmax=100
 
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
 #200000
-mcsweeps=2000
+mcsweeps=200
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
 #2
-inititer=1
+inititer=0
 #how many records do you want on the disk iteration are there in a run?
 #10000
 iterations=100
@@ -94,3 +99,12 @@
 w=10.0
 #direct force on vesicles with spontaneous curvature (float)
 F=2.0
+
+
+
+#plane confinement
+plane_confinement_switch=1
+#final plane distance (float in lmin)
+plane_d=10
+#plane to vesicle repulsion force while closing
+plane_F=10

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