From 49dbdd4940aa78021f4ba516f4edb632058262bf Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Wed, 25 Jun 2014 09:44:48 +0000
Subject: [PATCH] Fixes bugs in creating IsakPrograms compatible image
---
src/vesicle.c | 59 ++++++++++++++++++++++++++++++++++++++++++++++++++---------
1 files changed, 50 insertions(+), 9 deletions(-)
diff --git a/src/vesicle.c b/src/vesicle.c
index c87ead1..f63eb12 100644
--- a/src/vesicle.c
+++ b/src/vesicle.c
@@ -1,21 +1,62 @@
#include<general.h>
#include "vesicle.h"
+#include "vertex.h"
+#include "triangle.h"
+#include "bond.h"
+#include "cell.h"
+#include "stdlib.h"
+#include "poly.h"
+#include "sh.h"
+#include "shcomplex.h"
+
+ts_vesicle *init_vesicle(ts_uint N, ts_uint ncmax1, ts_uint ncmax2, ts_uint
+ncmax3, ts_double stepsize){
+ ts_vesicle *vesicle=(ts_vesicle *)calloc(1,sizeof(ts_vesicle));
+ vesicle->vlist=init_vertex_list(N);
+ vesicle->blist=init_bond_list();
+ vesicle->tlist=init_triangle_list();
+ vesicle->clist=init_cell_list(ncmax1, ncmax2, ncmax3, stepsize);
+ return vesicle;
+}
+
ts_bool vesicle_translate(ts_vesicle *vesicle,ts_double x, ts_double y, ts_double z){
ts_uint i;
- ts_vertex *vtx=vesicle->vlist.vertex;
- ts_uint nn=vesicle->vlist.n;
+ ts_vertex **vtx=vesicle->vlist->vtx;
+ ts_uint nn=vesicle->vlist->n;
for(i=0;i<nn;i++){
- vtx[i].x+=x;
- vtx[i].y+=y;
- vtx[i].z+=z;
+ vtx[i]->x+=x;
+ vtx[i]->y+=y;
+ vtx[i]->z+=z;
}
return TS_SUCCESS;
}
ts_bool vesicle_free(ts_vesicle *vesicle){
- vertex_list_free(&vesicle->vlist);
- bond_list_free(&vesicle->blist);
- triangle_list_free(&vesicle->tlist);
- cell_list_free(&vesicle->clist);
+ vtx_list_free(vesicle->vlist);
+ bond_list_free(vesicle->blist);
+ triangle_list_free(vesicle->tlist);
+ cell_list_free(vesicle->clist);
+ poly_list_free(vesicle->poly_list);
+ complex_sph_free(vesicle->sphHarmonics);
+ free(vesicle);
+ return TS_SUCCESS;
+}
+
+/* @brief Function makes a sum of partial volumes of each triangle. Volumes of
+ *
+ * Partial volumes are calculated when we calculate normals of triangles. It is
+ * relatively easy to calculate the volume of vesicle if we take into account
+ * that the volume of the whole vertex is simply sum of all partial volumes of
+ * all the triangles.
+ */
+ts_bool vesicle_volume(ts_vesicle *vesicle){
+ ts_double volume;
+ ts_uint i;
+ ts_triangle **tria=vesicle->tlist->tria;
+ volume=0;
+ for(i=0; i<vesicle->tlist->n;i++){
+ volume=volume+tria[i]->volume;
+ }
+ vesicle->volume=volume;
return TS_SUCCESS;
}
--
Gitblit v1.9.3