From 460c2a326b332e1b3e03621970a1b48dfb872050 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Mon, 28 Apr 2014 21:19:21 +0000
Subject: [PATCH] Added most important missing files

---
 src/io.c |   43 ++++++++++++++++++++++++++++++++++++++++++-
 1 files changed, 42 insertions(+), 1 deletions(-)

diff --git a/src/io.c b/src/io.c
index b222081..3fecef5 100644
--- a/src/io.c
+++ b/src/io.c
@@ -170,7 +170,8 @@
 */
 
 	fwrite(vesicle->clist, sizeof(ts_cell_list),1,  fh);
-	
+/* write tape information on vesicle */
+    fwrite(vesicle->tape,sizeof(ts_tape),1,fh);
 	fwrite(&iteration, sizeof(ts_uint),1,fh);
     fclose(fh);
     return TS_SUCCESS;
@@ -428,6 +429,9 @@
         	vesicle->clist->cell[i]->idx=i+1; // We enumerate cells! Probably never required!
     	}
 
+//recreating stored tape information//
+    vesicle->tape=(ts_tape *)malloc(sizeof(ts_tape));
+    retval=fread(vesicle->tape, sizeof(ts_tape),1,fh);
 	retval=fread(iteration,sizeof(ts_uint),1,fh);
     if(retval); 
     fclose(fh);
@@ -918,6 +922,39 @@
 
 
 
+ts_bool write_pov_file(ts_vesicle *vesicle, char *filename){
+	FILE *fh;
+	ts_uint i;
+	
+	fh=fopen(filename, "w");
+	if(fh==NULL){
+		err("Cannot open file %s for writing");
+		return TS_FAIL;
+	}
+
+	for(i=0;i<vesicle->tlist->n;i++){
+	
+	fprintf(fh,"\ttriangle {");
+	fprintf(fh,"\t<%e,%e,%e> <%e,%e,%e> <%e,%e,%e> }\n", 
+	vesicle->tlist->tria[i]->vertex[0]->x,
+	vesicle->tlist->tria[i]->vertex[0]->y,
+	vesicle->tlist->tria[i]->vertex[0]->z,
+
+	vesicle->tlist->tria[i]->vertex[1]->x,
+	vesicle->tlist->tria[i]->vertex[1]->y,
+	vesicle->tlist->tria[i]->vertex[1]->z,
+
+	vesicle->tlist->tria[i]->vertex[2]->x,
+	vesicle->tlist->tria[i]->vertex[2]->y,
+	vesicle->tlist->tria[i]->vertex[2]->z
+	);
+	}
+		
+	fclose(fh);
+	return TS_SUCCESS;
+}
+
+
 ts_tape *parsetape(char *filename){
   //  long int nshell=17,ncxmax=60, ncymax=60, nczmax=60, npoly=10, nmono=20, pswitch=0;  // THIS IS DUE TO CONFUSE BUG!
     ts_tape *tape=(ts_tape *)calloc(1,sizeof(ts_tape));
@@ -937,8 +974,11 @@
 	CFG_SIMPLE_INT("nfono",&tape->nfono),
 	CFG_SIMPLE_INT("R_nucleus",&tape->R_nucleus),
 	CFG_SIMPLE_FLOAT("dmax", &tape->dmax),
+	CFG_SIMPLE_FLOAT("dmin_interspecies", &tape->dmin_interspecies),
         CFG_SIMPLE_FLOAT("xk0",&tape->xk0),
 	CFG_SIMPLE_INT("pswitch",&tape->pswitch),
+	CFG_SIMPLE_INT("constvolswitch",&tape->constvolswitch),
+	CFG_SIMPLE_FLOAT("constvolprecision",&tape->constvolprecision),
 	CFG_SIMPLE_FLOAT("pressure",&tape->pressure),
 	CFG_SIMPLE_FLOAT("k_spring",&tape->kspring),
 	CFG_SIMPLE_FLOAT("xi",&tape->xi),
@@ -954,6 +994,7 @@
         CFG_SIMPLE_INT("smp_cores",&tape->brezveze0),
         CFG_SIMPLE_INT("cluster_nodes",&tape->brezveze1),
         CFG_SIMPLE_INT("distributed_processes",&tape->brezveze2),
+	CFG_SIMPLE_INT("spherical_harmonics_coefficients",&tape->shc),
         CFG_END()
     };
     cfg_t *cfg;    

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