From 459ff94855b2659de14ac2ac902b9658d28e19d5 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo@CAE-linux.(none)>
Date: Mon, 21 Apr 2014 11:11:37 +0000
Subject: [PATCH] Added complex spherical harmonics.

---
 src/tape |   46 ++++++++++++++++++++++++++++++++++++++--------
 1 files changed, 38 insertions(+), 8 deletions(-)

diff --git a/src/tape b/src/tape
index 695664d..be15cfd 100644
--- a/src/tape
+++ b/src/tape
@@ -1,13 +1,40 @@
 ####### Vesicle definitions ###########
 # nshell is a number of divisions of dipyramid
 nshell=17
-# dmax is the square of the bond length 
-dmax=1.67
-# bending rigidity of the membrane 
-xk0=25.0
-# max step size 
+# dmax is the max. bond length (in units l_min)
+dmax=1.7
+# dmin_interspecies in the min. dist. between different vertex species (in units l_min)
+dmin_interspecies=1.2
+# bending rigidity of the membrane (in units kT)
+xk0=10.0
+# max step size (in units l_min)
 stepsize=0.15
 
+# Pressure calculations
+# (pswitch=1: calc. p*dV energy contribution)
+pswitch = 1
+# pressure difference: p_inside - p_outside (in units kT/l_min^3):
+pressure=0.0
+
+####### Polymer (brush) definitions ###########
+# npoly is a number of polymers attached to npoly distinct vertices on vesicle
+npoly=0
+# nmono is a number of monomers in each polymer
+nmono=10
+# Spring constant between monomers of the polymer
+k_spring=800
+
+####### Filament (inside the vesicle) definitions ###########
+# nfil is a number of filaments inside the vesicle
+nfil=2
+# nfono is a number of monomers in each filament
+nfono=300
+# Persistence lenght of the filaments (in units l_min)
+xi=0
+
+####### Nucleus (inside the vesicle) ###########
+# Radius of an impenetrable hard sphere inside the vesicle
+R_nucleus=5
 
 #######  Cell definitions ############
 nxmax=60
@@ -17,13 +44,16 @@
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
-mcsweeps=100
+mcsweeps=250
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
-inititer=10
+inititer=0
 #how many records do you want on the disk iteration are there in a run?
-iterations=10
+iterations=1000
 
 
+###### Spherical harmonics ###########
+spherical_harmonics_coefficients=15
+
 #shut up if we are using cluster!!!
 quiet=false
 

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