From 42641cde38cfd1d27a2031604cc1397b5bd2849b Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Fri, 21 Mar 2014 20:57:24 +0000
Subject: [PATCH] Merge with trout-rnc.
---
src/io.h | 56 ++++++++++++++++++++++++++++++++++++++++++++++++++++++--
1 files changed, 54 insertions(+), 2 deletions(-)
diff --git a/src/io.h b/src/io.h
index 0dab974..bfc6173 100644
--- a/src/io.h
+++ b/src/io.h
@@ -1,6 +1,56 @@
#ifndef _IO_H
#define _IO_H
+/** @ Global variables for I/O operations like filenames etc. */
+/*static char mastername[1024];
+static char prefixname[1024];
+static ts_bool restore=0;
+static char tape[1024]; */
+int force_from_tape;
+
+
+typedef struct {
+ long int nshell;
+ long int ncxmax;
+ long int ncymax;
+ long int nczmax;
+ long int npoly;
+ long int nmono;
+ long int nfil;
+ long int nfono;
+ long int R_nucleus;
+ long int pswitch;
+ char *multiprocessing;
+ long int brezveze0;
+ long int brezveze1;
+ long int brezveze2;
+ ts_double xk0;
+ ts_double dmax;
+ ts_double stepsize;
+ ts_double kspring;
+ ts_double xi;
+ ts_double pressure;
+ long int iterations;
+ long int inititer;
+ long int mcsweeps;
+ long int quiet;
+} ts_tape;
+
+typedef struct{
+ ts_int force_from_tape;
+ ts_int reset_iteration_count;
+ char path[1024]; //path where all files should be added
+ char output_fullfilename[1024]; //name of the master file
+ char dump_fullfilename[1024]; //name of the dump file
+ char tape_fullfilename[1024]; //name of the tape file
+} ts_args;
+
+ts_args command_line_args;
+
+ts_bool parse_args(int argc, char **argv);
+
+
+
/** @brief Prints the position of vertices for the whole list
*
* The function is meant more or less as a debug tool, but can be used in production
@@ -48,7 +98,9 @@
ts_bool write_vertex_vtk_file(ts_vesicle *vesicle,ts_char *filename, ts_char *text);
ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno);
ts_bool write_master_xml_file(ts_char *filename);
-ts_bool parsetape(ts_vesicle *vesicle,ts_uint *iterations);
+ts_tape *parsetape(char *filename);
+ts_bool tape_free(ts_tape *tape);
-
+ts_bool dump_state(ts_vesicle *vesicle, ts_uint iteration);
+ts_vesicle *restore_state(ts_uint *iteration);
#endif
--
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