From 42641cde38cfd1d27a2031604cc1397b5bd2849b Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Fri, 21 Mar 2014 20:57:24 +0000
Subject: [PATCH] Merge with trout-rnc.

---
 src/general.h |   18 ++++++++++++------
 1 files changed, 12 insertions(+), 6 deletions(-)

diff --git a/src/general.h b/src/general.h
index f4e5833..79da2ba 100644
--- a/src/general.h
+++ b/src/general.h
@@ -3,7 +3,6 @@
 
 #include<stdarg.h>
 #include<stdio.h>
-
 /* @brief This is a header file, defining general constants and structures.
   * @file header.h
   * @author Samo Penic
@@ -167,10 +166,11 @@
     	ts_uint idx;
 	ts_vertex *vtx1;
 	ts_vertex *vtx2;
-    ts_double bond_length;
-    ts_double bond_length_dual;
-	ts_bool tainted;
+    	ts_double bond_length;
+    	ts_double bond_length_dual;
+	ts_bool tainted; //TODO: remove
 	ts_double energy;
+	ts_double x,y,z;
 };
 typedef struct ts_bond ts_bond;
 
@@ -257,12 +257,18 @@
    	ts_double cm[3];
 	ts_double volume;
 	ts_spharm *sphHarmonics;
-
+// Polymers outside the vesicle and attached to the vesicle membrane (polymer brush):
 	ts_poly_list *poly_list;
+// Filaments inside the vesicle (not attached to the vesicel membrane:
+	ts_poly_list *filament_list;
+
 	ts_double spring_constant;
 	ts_double pressure;
-} ts_vesicle;
+	ts_int pswitch;
 
+	ts_double R_nucleus;
+
+} ts_vesicle;
 
 
 

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