From 304510886da7e3969efd6d506e68652b533c0975 Mon Sep 17 00:00:00 2001
From: Miha <mihaf@hapi.(none)>
Date: Fri, 21 Feb 2014 12:22:07 +0000
Subject: [PATCH] Removed harmonic potential between poly-monomers for now. Added min and max distance between neighboring poly-vertices.

---
 src/frame.c |   25 +++++++++++++++++--------
 1 files changed, 17 insertions(+), 8 deletions(-)

diff --git a/src/frame.c b/src/frame.c
index 5cfede9..1ee270b 100644
--- a/src/frame.c
+++ b/src/frame.c
@@ -31,11 +31,11 @@
 }
 
 ts_bool cell_occupation(ts_vesicle *vesicle){
-    ts_uint i,cellidx, n=vesicle->vlist->n;
-    ts_double shift;
-    ts_double dcell;
-    shift=(ts_double) vesicle->clist->ncmax[0]/2;
-    dcell=1.0/(1.0 + vesicle->stepsize);
+    ts_uint i,j,cellidx, n=vesicle->vlist->n;
+    //ts_double shift;
+    //ts_double dcell;
+    //shift=(ts_double) vesicle->clist->ncmax[0]/2;
+    //dcell=1.0/(1.0 + vesicle->stepsize);
     //`fprintf(stderr, "Bil sem tu\n"); 
 
     cell_list_cell_occupation_clear(vesicle->clist);
@@ -45,10 +45,19 @@
 //    vesicle->vlist->vtx[i]->cell=vesicle->clist->cell[cellidx];
 
     cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->vlist->vtx[i]);
-
     }
+
+    for(i=0;i<vesicle->poly_list->n;i++){
+	for(j=0;j<vesicle->poly_list->poly[i]->vlist->n;j++){
+    	cellidx=vertex_self_avoidance(vesicle, vesicle->poly_list->poly[i]->vlist->vtx[j]);
+    	cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->poly_list->poly[i]->vlist->vtx[j]);
+	}
+    }
+
+    
+
     //fprintf(stderr, "Bil sem tu\n"); 
-	if(dcell);
-	if(shift);
+	//if(dcell);
+	//if(shift);
     return TS_SUCCESS;
 }

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