From 2c4278db6ead5c27e30a3000097ed898c968534e Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sat, 09 Mar 2019 19:45:22 +0000
Subject: [PATCH] Added direct force plugin and fixes in stretching energy

---
 src/plugins/Makefile.in |   85 ++++++++++++++++++++++++++++++++++++++----
 1 files changed, 77 insertions(+), 8 deletions(-)

diff --git a/src/plugins/Makefile.in b/src/plugins/Makefile.in
index bf7b06d..cc92f88 100644
--- a/src/plugins/Makefile.in
+++ b/src/plugins/Makefile.in
@@ -127,16 +127,37 @@
   }
 am__installdirs = "$(DESTDIR)$(libdir)"
 LTLIBRARIES = $(lib_LTLIBRARIES)
-demoplugin_la_LIBADD =
-am_demoplugin_la_OBJECTS = demo_plugin.lo
-demoplugin_la_OBJECTS = $(am_demoplugin_la_OBJECTS)
+constant_area_la_LIBADD =
+am_constant_area_la_OBJECTS = constant_area.lo
+constant_area_la_OBJECTS = $(am_constant_area_la_OBJECTS)
 AM_V_lt = $(am__v_lt_@AM_V@)
 am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@)
 am__v_lt_0 = --silent
 am__v_lt_1 = 
+constant_area_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
+	$(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
+	$(AM_CFLAGS) $(CFLAGS) $(constant_area_la_LDFLAGS) $(LDFLAGS) \
+	-o $@
+constant_volume_la_LIBADD =
+am_constant_volume_la_OBJECTS = constant_volume.lo
+constant_volume_la_OBJECTS = $(am_constant_volume_la_OBJECTS)
+constant_volume_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
+	$(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
+	$(AM_CFLAGS) $(CFLAGS) $(constant_volume_la_LDFLAGS) \
+	$(LDFLAGS) -o $@
+demoplugin_la_LIBADD =
+am_demoplugin_la_OBJECTS = demo_plugin.lo
+demoplugin_la_OBJECTS = $(am_demoplugin_la_OBJECTS)
 demoplugin_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
 	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
 	$(demoplugin_la_LDFLAGS) $(LDFLAGS) -o $@
+direct_force_on_c0_la_LIBADD =
+am_direct_force_on_c0_la_OBJECTS = direct_force_on_c0.lo
+direct_force_on_c0_la_OBJECTS = $(am_direct_force_on_c0_la_OBJECTS)
+direct_force_on_c0_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
+	$(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
+	$(AM_CFLAGS) $(CFLAGS) $(direct_force_on_c0_la_LDFLAGS) \
+	$(LDFLAGS) -o $@
 nucleus_la_LIBADD =
 am_nucleus_la_OBJECTS = nucleus.lo
 nucleus_la_OBJECTS = $(am_nucleus_la_OBJECTS)
@@ -149,6 +170,19 @@
 plane_confinement_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
 	$(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
 	$(AM_CFLAGS) $(CFLAGS) $(plane_confinement_la_LDFLAGS) \
+	$(LDFLAGS) -o $@
+pressure_la_LIBADD =
+am_pressure_la_OBJECTS = pressure.lo
+pressure_la_OBJECTS = $(am_pressure_la_OBJECTS)
+pressure_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
+	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(pressure_la_LDFLAGS) $(LDFLAGS) -o $@
+stretching_energy_la_LIBADD =
+am_stretching_energy_la_OBJECTS = stretching_energy.lo
+stretching_energy_la_OBJECTS = $(am_stretching_energy_la_OBJECTS)
+stretching_energy_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
+	$(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
+	$(AM_CFLAGS) $(CFLAGS) $(stretching_energy_la_LDFLAGS) \
 	$(LDFLAGS) -o $@
 vmdefaulthardconstraints_la_LIBADD =
 am_vmdefaulthardconstraints_la_OBJECTS = default_hard_constraints.lo
@@ -192,11 +226,16 @@
 am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@)
 am__v_CCLD_0 = @echo "  CCLD    " $@;
 am__v_CCLD_1 = 
-SOURCES = $(demoplugin_la_SOURCES) $(nucleus_la_SOURCES) \
-	$(plane_confinement_la_SOURCES) \
+SOURCES = $(constant_area_la_SOURCES) $(constant_volume_la_SOURCES) \
+	$(demoplugin_la_SOURCES) $(direct_force_on_c0_la_SOURCES) \
+	$(nucleus_la_SOURCES) $(plane_confinement_la_SOURCES) \
+	$(pressure_la_SOURCES) $(stretching_energy_la_SOURCES) \
 	$(vmdefaulthardconstraints_la_SOURCES)
-DIST_SOURCES = $(demoplugin_la_SOURCES) $(nucleus_la_SOURCES) \
-	$(plane_confinement_la_SOURCES) \
+DIST_SOURCES = $(constant_area_la_SOURCES) \
+	$(constant_volume_la_SOURCES) $(demoplugin_la_SOURCES) \
+	$(direct_force_on_c0_la_SOURCES) $(nucleus_la_SOURCES) \
+	$(plane_confinement_la_SOURCES) $(pressure_la_SOURCES) \
+	$(stretching_energy_la_SOURCES) \
 	$(vmdefaulthardconstraints_la_SOURCES)
 am__can_run_installinfo = \
   case $$AM_UPDATE_INFO_DIR in \
@@ -346,7 +385,7 @@
 top_builddir = @top_builddir@
 top_srcdir = @top_srcdir@
 AM_CFLAGS = -Wall -Werror -DTS_VERSION=\"$(GITVERSION)\" -fgnu89-inline -Wno-error=date-time -I..
-lib_LTLIBRARIES = demoplugin.la vmdefaulthardconstraints.la nucleus.la plane_confinement.la
+lib_LTLIBRARIES = demoplugin.la vmdefaulthardconstraints.la nucleus.la plane_confinement.la pressure.la constant_volume.la constant_area.la stretching_energy.la direct_force_on_c0.la
 demoplugin_la_SOURCES = demo_plugin.c
 demoplugin_la_LDFLAGS = -module -avoid-version -export-dynamic
 vmdefaulthardconstraints_la_SOURCES = default_hard_constraints.c
@@ -355,6 +394,16 @@
 nucleus_la_LDFLAGS = -module -avoid-version -export-dynamic
 plane_confinement_la_SOURCES = plane_confinement.c 
 plane_confinement_la_LDFLAGS = -module -avoid-version -export-dynamic
+pressure_la_SOURCES = pressure.c 
+pressure_la_LDFLAGS = -module -avoid-version -export-dynamic
+constant_volume_la_SOURCES = constant_volume.c 
+constant_volume_la_LDFLAGS = -module -avoid-version -export-dynamic
+constant_area_la_SOURCES = constant_area.c 
+constant_area_la_LDFLAGS = -module -avoid-version -export-dynamic
+stretching_energy_la_SOURCES = stretching_energy.c 
+stretching_energy_la_LDFLAGS = -module -avoid-version -export-dynamic
+direct_force_on_c0_la_SOURCES = direct_force_on_c0.c 
+direct_force_on_c0_la_LDFLAGS = -module -avoid-version -export-dynamic
 all: all-am
 
 .SUFFIXES:
@@ -424,14 +473,29 @@
 	  rm -f $${locs}; \
 	}
 
+constant_area.la: $(constant_area_la_OBJECTS) $(constant_area_la_DEPENDENCIES) $(EXTRA_constant_area_la_DEPENDENCIES) 
+	$(AM_V_CCLD)$(constant_area_la_LINK) -rpath $(libdir) $(constant_area_la_OBJECTS) $(constant_area_la_LIBADD) $(LIBS)
+
+constant_volume.la: $(constant_volume_la_OBJECTS) $(constant_volume_la_DEPENDENCIES) $(EXTRA_constant_volume_la_DEPENDENCIES) 
+	$(AM_V_CCLD)$(constant_volume_la_LINK) -rpath $(libdir) $(constant_volume_la_OBJECTS) $(constant_volume_la_LIBADD) $(LIBS)
+
 demoplugin.la: $(demoplugin_la_OBJECTS) $(demoplugin_la_DEPENDENCIES) $(EXTRA_demoplugin_la_DEPENDENCIES) 
 	$(AM_V_CCLD)$(demoplugin_la_LINK) -rpath $(libdir) $(demoplugin_la_OBJECTS) $(demoplugin_la_LIBADD) $(LIBS)
+
+direct_force_on_c0.la: $(direct_force_on_c0_la_OBJECTS) $(direct_force_on_c0_la_DEPENDENCIES) $(EXTRA_direct_force_on_c0_la_DEPENDENCIES) 
+	$(AM_V_CCLD)$(direct_force_on_c0_la_LINK) -rpath $(libdir) $(direct_force_on_c0_la_OBJECTS) $(direct_force_on_c0_la_LIBADD) $(LIBS)
 
 nucleus.la: $(nucleus_la_OBJECTS) $(nucleus_la_DEPENDENCIES) $(EXTRA_nucleus_la_DEPENDENCIES) 
 	$(AM_V_CCLD)$(nucleus_la_LINK) -rpath $(libdir) $(nucleus_la_OBJECTS) $(nucleus_la_LIBADD) $(LIBS)
 
 plane_confinement.la: $(plane_confinement_la_OBJECTS) $(plane_confinement_la_DEPENDENCIES) $(EXTRA_plane_confinement_la_DEPENDENCIES) 
 	$(AM_V_CCLD)$(plane_confinement_la_LINK) -rpath $(libdir) $(plane_confinement_la_OBJECTS) $(plane_confinement_la_LIBADD) $(LIBS)
+
+pressure.la: $(pressure_la_OBJECTS) $(pressure_la_DEPENDENCIES) $(EXTRA_pressure_la_DEPENDENCIES) 
+	$(AM_V_CCLD)$(pressure_la_LINK) -rpath $(libdir) $(pressure_la_OBJECTS) $(pressure_la_LIBADD) $(LIBS)
+
+stretching_energy.la: $(stretching_energy_la_OBJECTS) $(stretching_energy_la_DEPENDENCIES) $(EXTRA_stretching_energy_la_DEPENDENCIES) 
+	$(AM_V_CCLD)$(stretching_energy_la_LINK) -rpath $(libdir) $(stretching_energy_la_OBJECTS) $(stretching_energy_la_LIBADD) $(LIBS)
 
 vmdefaulthardconstraints.la: $(vmdefaulthardconstraints_la_OBJECTS) $(vmdefaulthardconstraints_la_DEPENDENCIES) $(EXTRA_vmdefaulthardconstraints_la_DEPENDENCIES) 
 	$(AM_V_CCLD)$(vmdefaulthardconstraints_la_LINK) -rpath $(libdir) $(vmdefaulthardconstraints_la_OBJECTS) $(vmdefaulthardconstraints_la_LIBADD) $(LIBS)
@@ -442,10 +506,15 @@
 distclean-compile:
 	-rm -f *.tab.c
 
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/constant_area.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/constant_volume.Plo@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/default_hard_constraints.Plo@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/demo_plugin.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/direct_force_on_c0.Plo@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/nucleus.Plo@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/plane_confinement.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/pressure.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/stretching_energy.Plo@am__quote@
 
 .c.o:
 @am__fastdepCC_TRUE@	$(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<

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