From 2c4278db6ead5c27e30a3000097ed898c968534e Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sat, 09 Mar 2019 19:45:22 +0000
Subject: [PATCH] Added direct force plugin and fixes in stretching energy

---
 src/plugins/Makefile.in |   31 +++++++++++++++++++++++--------
 1 files changed, 23 insertions(+), 8 deletions(-)

diff --git a/src/plugins/Makefile.in b/src/plugins/Makefile.in
index d7fca36..cc92f88 100644
--- a/src/plugins/Makefile.in
+++ b/src/plugins/Makefile.in
@@ -151,6 +151,13 @@
 demoplugin_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
 	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
 	$(demoplugin_la_LDFLAGS) $(LDFLAGS) -o $@
+direct_force_on_c0_la_LIBADD =
+am_direct_force_on_c0_la_OBJECTS = direct_force_on_c0.lo
+direct_force_on_c0_la_OBJECTS = $(am_direct_force_on_c0_la_OBJECTS)
+direct_force_on_c0_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
+	$(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
+	$(AM_CFLAGS) $(CFLAGS) $(direct_force_on_c0_la_LDFLAGS) \
+	$(LDFLAGS) -o $@
 nucleus_la_LIBADD =
 am_nucleus_la_OBJECTS = nucleus.lo
 nucleus_la_OBJECTS = $(am_nucleus_la_OBJECTS)
@@ -171,7 +178,7 @@
 	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
 	$(pressure_la_LDFLAGS) $(LDFLAGS) -o $@
 stretching_energy_la_LIBADD =
-am_stretching_energy_la_OBJECTS = constant_area.lo
+am_stretching_energy_la_OBJECTS = stretching_energy.lo
 stretching_energy_la_OBJECTS = $(am_stretching_energy_la_OBJECTS)
 stretching_energy_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
 	$(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
@@ -220,14 +227,15 @@
 am__v_CCLD_0 = @echo "  CCLD    " $@;
 am__v_CCLD_1 = 
 SOURCES = $(constant_area_la_SOURCES) $(constant_volume_la_SOURCES) \
-	$(demoplugin_la_SOURCES) $(nucleus_la_SOURCES) \
-	$(plane_confinement_la_SOURCES) $(pressure_la_SOURCES) \
-	$(stretching_energy_la_SOURCES) \
+	$(demoplugin_la_SOURCES) $(direct_force_on_c0_la_SOURCES) \
+	$(nucleus_la_SOURCES) $(plane_confinement_la_SOURCES) \
+	$(pressure_la_SOURCES) $(stretching_energy_la_SOURCES) \
 	$(vmdefaulthardconstraints_la_SOURCES)
 DIST_SOURCES = $(constant_area_la_SOURCES) \
 	$(constant_volume_la_SOURCES) $(demoplugin_la_SOURCES) \
-	$(nucleus_la_SOURCES) $(plane_confinement_la_SOURCES) \
-	$(pressure_la_SOURCES) $(stretching_energy_la_SOURCES) \
+	$(direct_force_on_c0_la_SOURCES) $(nucleus_la_SOURCES) \
+	$(plane_confinement_la_SOURCES) $(pressure_la_SOURCES) \
+	$(stretching_energy_la_SOURCES) \
 	$(vmdefaulthardconstraints_la_SOURCES)
 am__can_run_installinfo = \
   case $$AM_UPDATE_INFO_DIR in \
@@ -377,7 +385,7 @@
 top_builddir = @top_builddir@
 top_srcdir = @top_srcdir@
 AM_CFLAGS = -Wall -Werror -DTS_VERSION=\"$(GITVERSION)\" -fgnu89-inline -Wno-error=date-time -I..
-lib_LTLIBRARIES = demoplugin.la vmdefaulthardconstraints.la nucleus.la plane_confinement.la pressure.la constant_volume.la constant_area.la stretching_energy.la
+lib_LTLIBRARIES = demoplugin.la vmdefaulthardconstraints.la nucleus.la plane_confinement.la pressure.la constant_volume.la constant_area.la stretching_energy.la direct_force_on_c0.la
 demoplugin_la_SOURCES = demo_plugin.c
 demoplugin_la_LDFLAGS = -module -avoid-version -export-dynamic
 vmdefaulthardconstraints_la_SOURCES = default_hard_constraints.c
@@ -392,8 +400,10 @@
 constant_volume_la_LDFLAGS = -module -avoid-version -export-dynamic
 constant_area_la_SOURCES = constant_area.c 
 constant_area_la_LDFLAGS = -module -avoid-version -export-dynamic
-stretching_energy_la_SOURCES = constant_area.c 
+stretching_energy_la_SOURCES = stretching_energy.c 
 stretching_energy_la_LDFLAGS = -module -avoid-version -export-dynamic
+direct_force_on_c0_la_SOURCES = direct_force_on_c0.c 
+direct_force_on_c0_la_LDFLAGS = -module -avoid-version -export-dynamic
 all: all-am
 
 .SUFFIXES:
@@ -472,6 +482,9 @@
 demoplugin.la: $(demoplugin_la_OBJECTS) $(demoplugin_la_DEPENDENCIES) $(EXTRA_demoplugin_la_DEPENDENCIES) 
 	$(AM_V_CCLD)$(demoplugin_la_LINK) -rpath $(libdir) $(demoplugin_la_OBJECTS) $(demoplugin_la_LIBADD) $(LIBS)
 
+direct_force_on_c0.la: $(direct_force_on_c0_la_OBJECTS) $(direct_force_on_c0_la_DEPENDENCIES) $(EXTRA_direct_force_on_c0_la_DEPENDENCIES) 
+	$(AM_V_CCLD)$(direct_force_on_c0_la_LINK) -rpath $(libdir) $(direct_force_on_c0_la_OBJECTS) $(direct_force_on_c0_la_LIBADD) $(LIBS)
+
 nucleus.la: $(nucleus_la_OBJECTS) $(nucleus_la_DEPENDENCIES) $(EXTRA_nucleus_la_DEPENDENCIES) 
 	$(AM_V_CCLD)$(nucleus_la_LINK) -rpath $(libdir) $(nucleus_la_OBJECTS) $(nucleus_la_LIBADD) $(LIBS)
 
@@ -497,9 +510,11 @@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/constant_volume.Plo@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/default_hard_constraints.Plo@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/demo_plugin.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/direct_force_on_c0.Plo@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/nucleus.Plo@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/plane_confinement.Plo@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/pressure.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/stretching_energy.Plo@am__quote@
 
 .c.o:
 @am__fastdepCC_TRUE@	$(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<

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