From 267cf14b1ced6fce480e4292131a987a1802e28a Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sun, 23 Sep 2018 08:32:24 +0000
Subject: [PATCH] Confinement planes, not debugged

---
 src/general.h |   32 ++++++++++++++++++++++++++++++--
 1 files changed, 30 insertions(+), 2 deletions(-)

diff --git a/src/general.h b/src/general.h
index 31de50a..503486f 100644
--- a/src/general.h
+++ b/src/general.h
@@ -156,7 +156,8 @@
         ts_double projArea;
         ts_double relR;
         ts_double solAngle;
-	struct ts_poly *grafted_poly;
+		struct ts_poly *grafted_poly;
+		struct ts_cluster *cluster;
 };
 typedef struct ts_vertex ts_vertex;
 
@@ -257,6 +258,7 @@
 	long int nczmax;
 	long int npoly;
 	long int nmono;
+	long int internal_poly;
 	long int nfil;
 	long int nfono;
 	long int R_nucleus;
@@ -286,8 +288,16 @@
 	long int number_of_vertices_with_c0;
 	ts_double c0;
 	ts_double w;
+	ts_double F;
+	long int plane_confinement_switch;
+	ts_double plane_d;
+	ts_double plane_F;
 } ts_tape;
 
+typedef struct{
+	ts_float z_max;
+	ts_float z_min;
+} ts_confinement_plane;
 
 
 
@@ -317,8 +327,25 @@
 	ts_double R_nucleusY;
 	ts_double R_nucleusZ;
 	ts_double nucleus_center[3];
-    ts_double area;
+	ts_double area;
+	ts_confinement_plane confinement_plane;
 } ts_vesicle;
+
+
+
+struct ts_cluster{
+	ts_uint nvtx;
+	ts_uint idx;
+	ts_vertex **vtx;
+};
+
+typedef struct ts_cluster ts_cluster;
+
+typedef struct{
+	ts_uint n;
+	ts_cluster **cluster;
+} ts_cluster_list;
+
 
 
 
@@ -356,4 +383,5 @@
 int createPidFile(const char *progName, const char *pidFile, int flags);
 
 int lockRegion(int fd, int type, int whence, int start, int len);
+char *libVersion();
 #endif

--
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