From 23b0edbc039c47c7b39288c8e16a72c968cfe3b3 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 10 Jul 2012 12:45:50 +0000
Subject: [PATCH] Merged with bondflip debug branch
---
src/general.h | 112 +++++++++++++++++++++++++++++++++++++++++--------------
1 files changed, 83 insertions(+), 29 deletions(-)
diff --git a/src/general.h b/src/general.h
index 5b4b491..6263862 100644
--- a/src/general.h
+++ b/src/general.h
@@ -2,6 +2,7 @@
#define _GENERAL_H
#include<stdarg.h>
+#include<stdio.h>
/* @brief This is a header file, defining general constants and structures.
* @file header.h
@@ -109,29 +110,50 @@
/* STRUCTURES */
+
+/** @brief Data structure for keeping the coordinates in selected coordinate
+ * system
+ */
+#define TS_COORD_CARTESIAN 0
+#define TS_COORD_SPHERICAL 1
+#define TS_COORD_CYLINDRICAL 2
+
+typedef struct {
+ ts_double e1;
+ ts_double e2;
+ ts_double e3;
+ ts_uint coord_type;
+} ts_coord;
+
+
+
/** @brief Data structure of all data connected to a vertex
*
- * ts_vertex holds the data for one single point (bead, vertex) in the space. To understand how to use it
+ * ts_vertex holds the data for one single point (bead, vertex). To understand how to use it
* here is a detailed description of the fields in the data structure. */
struct ts_vertex {
- ts_uint idx; /**< Represents index of the vertex point. Should become obsolete in C. */
- ts_double x; /**< The x coordinate of vertex. */
+ ts_uint idx;
+ ts_double x; /**< The x coordinate of vertex. */
ts_double y; /**< The y coordinate of vertex. */
ts_double z; /**< The z coordinate of vertex. */
ts_uint neigh_no; /**< The number of neighbours. */
- struct ts_vertex ***neigh; /**< The pointer that holds neigh_no pointers to this structure. Careful when using pointers to pointers! Also developers do mistakes here. */
- ts_double *bond_length;
- ts_double *bond_length_dual;
+ struct ts_vertex **neigh; /**< The pointer that holds neigh_no pointers to this structure. */
+ ts_double *bond_length; /**< Obsolete! The bond lenght is moved to ts_bond */
+ ts_double *bond_length_dual; /**< Obsolete! Bond length in dual lattice is moved to ts_bond! */
ts_double curvature;
ts_double energy;
ts_double energy_h;
ts_uint tristar_no;
- struct ts_triangle ***tristar;
- struct ts_bond ***bond;
- struct ts_cell *cell;
+ struct ts_triangle **tristar; /**< The list of triangles this vertex belongs to. This is an array of pointers to ts_triangle structure of tristar_no length */
+ ts_uint bond_no;
+ struct ts_bond **bond; /**< Array of pointers of lenght bond_no that stores information on bonds. */
+ struct ts_cell *cell; /**< Which cell do we belong to? */
ts_double xk;
ts_double c;
ts_uint id;
+ ts_double projArea;
+ ts_double relR;
+ ts_double solAngle;
};
typedef struct ts_vertex ts_vertex;
@@ -141,52 +163,83 @@
} ts_vertex_list;
-
-/** ts_bond is a structure that describes a bond */
-typedef struct {
+struct ts_bond {
+ ts_uint idx;
ts_vertex *vtx1;
ts_vertex *vtx2;
ts_double bond_length;
ts_double bond_length_dual;
-} ts_bond;
+};
+typedef struct ts_bond ts_bond;
+
+struct ts_bond_list {
+ ts_uint n;
+ ts_bond **bond;
+};
+typedef struct ts_bond_list ts_bond_list;
struct ts_triangle {
- ts_uint idx;
+ ts_uint idx;
ts_vertex *vertex[3];
ts_uint neigh_no;
struct ts_triangle **neigh;
ts_double xnorm;
ts_double ynorm;
ts_double znorm;
-
+ ts_double area; // firstly needed for sh.c
+ ts_double volume; // firstly needed for sh.c
};
typedef struct ts_triangle ts_triangle;
+
+struct ts_triangle_list{
+ ts_uint n;
+ ts_triangle **tria;
+};
+typedef struct ts_triangle_list ts_triangle_list;
+
typedef struct ts_cell {
ts_uint idx;
ts_vertex **vertex;
ts_uint nvertex;
-} ts_cell;
+} ts_cell;
-typedef struct {
- ts_vertex **vlist;
- ts_bond **blist;
- ts_triangle **tlist;
- ts_cell **clist;
- ts_uint nshell;
- ts_uint nvertex;
- ts_uint nbond;
- ts_uint ntria;
- ts_cell ncell;
+typedef struct ts_cell_list{
+ ts_uint ncmax[3];
+ ts_uint cellno;
+ ts_cell **cell;
ts_double dcell;
ts_double shift;
ts_double max_occupancy;
- ts_uint ncmax[3];
+} ts_cell_list;
+
+
+typedef struct {
+ ts_uint l;
+ ts_double **ulm;
+ ts_double **sumUlm2;
+ ts_uint N;
+ ts_double **co;
+ ts_double ***Ylmi;
+} ts_spharm;
+
+
+
+typedef struct {
+ ts_vertex_list *vlist;
+ ts_bond_list *blist;
+ ts_triangle_list *tlist;
+ ts_cell_list *clist;
+ ts_uint nshell;
ts_double bending_rigidity;
ts_double dmax;
ts_double stepsize;
ts_double cm[3];
+ ts_double volume;
+ ts_spharm *sphHarmonics;
} ts_vesicle;
+
+
/* GLOBAL VARIABLES */
@@ -209,8 +262,9 @@
*/
void fatal(char *text, ts_int errcode);
-//ts_uint ts_fprintf(FILE *fd, char *fmt, va_list ap);
+ts_uint ts_fprintf(FILE *fd, char *fmt, ...);
-#define VTX(vlist,n) &(vlist->vtx[n])
+#define VTX(n) &(vlist->vtx[n])
+#define VTX_DATA(n) vlist->vtx[n].data
#endif
--
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