From 1ad6d1ed6bda8a11f0922c33445c6fb52c0ffa96 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Thu, 12 Jul 2012 15:40:42 +0000
Subject: [PATCH] Gained 10% of time....
---
src/cell.c | 36 ++++++++++++++++--------------------
1 files changed, 16 insertions(+), 20 deletions(-)
diff --git a/src/cell.c b/src/cell.c
index 26ce2d6..47d7fab 100644
--- a/src/cell.c
+++ b/src/cell.c
@@ -19,19 +19,15 @@
if(clist->cell==NULL) fatal("Error while allocating memory for cell list! ncmax too large?",101);
for(i=0;i<nocells;i++){
- clist->cell[i]=(ts_cell *)malloc(sizeof(ts_cell));
+ clist->cell[i]=(ts_cell *)calloc(1,sizeof(ts_cell));
if(clist->cell[i]==NULL) fatal("Error while allocating memory for cell list! ncmax too large?",102);
clist->cell[i]->idx=i+1; // We enumerate cells! Probably never required!
- clist->cell[i]->data=(ts_cell_data *)calloc(1,sizeof(ts_cell_data));
}
return clist;
}
ts_bool cell_free(ts_cell* cell){
- if(cell->data!=NULL){
- if(cell->data->vertex!=NULL) free(cell->data->vertex);
- free(cell->data);
- }
+ if(cell->vertex!=NULL) free(cell->vertex);
free(cell);
return TS_SUCCESS;
}
@@ -53,9 +49,9 @@
ts_uint cellidx;
ts_uint ncx, ncy,ncz;
ts_cell_list *clist=vesicle->clist;
- ncx=(ts_uint)((vtx->data->x-vesicle->cm[0])*clist->dcell+clist->shift);
- ncy=(ts_uint)((vtx->data->y-vesicle->cm[1])*clist->dcell+clist->shift);
- ncz=(ts_uint)((vtx->data->z-vesicle->cm[2])*clist->dcell+clist->shift);
+ ncx=(ts_uint)((vtx->x-vesicle->cm[0])*clist->dcell+clist->shift);
+ ncy=(ts_uint)((vtx->y-vesicle->cm[1])*clist->dcell+clist->shift);
+ ncz=(ts_uint)((vtx->z-vesicle->cm[2])*clist->dcell+clist->shift);
if(ncx == clist->ncmax[0]-1 || ncx == 2){
fatal("Vesicle is positioned outside the cell covered area. Coordinate x is the problem.",1500);
@@ -74,12 +70,12 @@
//TODO: looks ok, but debug anyway in the future
ts_bool cell_add_vertex(ts_cell *cell, ts_vertex *vtx){
- cell->data->nvertex++;
- cell->data->vertex=(ts_vertex **)realloc(cell->data->vertex,cell->data->nvertex*sizeof(ts_vertex *));
- if(vtx->data->neigh == NULL){
+ cell->nvertex++;
+ cell->vertex=(ts_vertex **)realloc(cell->vertex,cell->nvertex*sizeof(ts_vertex *));
+ if(cell->vertex == NULL){
fatal("Reallocation of memory failed during insertion of vertex in cell_add_vertex",3);
}
- cell->data->vertex[cell->data->nvertex-1]=vtx;
+ cell->vertex[cell->nvertex-1]=vtx;
return TS_SUCCESS;
}
@@ -87,11 +83,11 @@
ts_bool cell_list_cell_occupation_clear(ts_cell_list *clist){
ts_uint i;
for(i=0;i<clist->cellno;i++){
- if(clist->cell[i]->data->vertex != NULL){
- free(clist->cell[i]->data->vertex);
- clist->cell[i]->data->vertex=NULL;
+ if(clist->cell[i]->vertex != NULL){
+ free(clist->cell[i]->vertex);
+ clist->cell[i]->vertex=NULL;
}
- clist->cell[i]->data->nvertex=0;
+ clist->cell[i]->nvertex=0;
}
return TS_SUCCESS;
}
@@ -112,7 +108,7 @@
for(k=ncz-1;k<=ncz+1;k++){
neigh_cidx=k+(j-1)*clist->ncmax[2]+(i-1)*clist->ncmax[2]*clist->ncmax[1] -1;
// fprintf(stderr,"neigh_cell_index=%i\n",neigh_cidx);
- cell_occupation=clist->cell[neigh_cidx]->data->nvertex;
+ cell_occupation=clist->cell[neigh_cidx]->nvertex;
// fprintf(stderr, "cell_occupation=%i\n",cell_occupation);
if(cell_occupation>clist->max_occupancy){
fatal("Neighbouring cell occupation more than set max_occupancy value.",2000);
@@ -121,9 +117,9 @@
// cell!
if(cell_occupation>1){
for(l=0;l<cell_occupation;l++){
- if(clist->cell[neigh_cidx]->data->vertex[l]!=vtx){
+ if(clist->cell[neigh_cidx]->vertex[l]!=vtx){
// fprintf(stderr,"calling dist on vertex %i\n",l);
- dist=vtx_distance_sq(clist->cell[neigh_cidx]->data->vertex[l],tvtx);
+ dist=vtx_distance_sq(clist->cell[neigh_cidx]->vertex[l],tvtx);
// fprintf(stderr,"dist was %f\n",dist);
if(dist<1) return TS_FAIL;
}
--
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