From 1ab449a2d9d4433794736566014f5c311d5a9317 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Sat, 08 Mar 2014 16:33:08 +0000
Subject: [PATCH] tape fixed, output has additional timestamp, ncurrent iteration is dumped and reread, but simulation is not restarted at correct time

---
 src/tape |   43 ++++++++++++++++++++++++++++++++++++-------
 1 files changed, 36 insertions(+), 7 deletions(-)

diff --git a/src/tape b/src/tape
index 26b4d44..59b417a 100644
--- a/src/tape
+++ b/src/tape
@@ -1,13 +1,26 @@
 ####### Vesicle definitions ###########
 # nshell is a number of divisions of dipyramid
-nshell=20
-# dmax is the square of the bond length 
-dmax=1.67
-# bending rigidity of the membrane 
+nshell=17
+# dmax is the max. bond length (in units l_min)
+dmax=1.7
+# bending rigidity of the membrane (in units kT)
 xk0=25.0
-# max step size 
+# max step size (in units l_min)
 stepsize=0.15
 
+# Pressure calculations
+# (pswitch=1: calc. p*dV energy contribution)
+pswitch = 0
+# pressure difference: p_inside - p_outside (in units l_min^3/kT):
+pressure=0.0
+
+####### Polymer definitions ###########
+# npoly is a number of polymers attached to npoly distinct vertices on vesicle
+npoly=20
+# nmono is a number of monomers in each polymer
+nmono=10
+# Spring constant between monomers of the polymer
+k_spring=800
 
 #######  Cell definitions ############
 nxmax=60
@@ -16,8 +29,24 @@
 
 
 ####### Program Control ############
-#how many iteration are there in a run?
-iterations=20000
+#how many MC sweeps between subsequent records of states to disk
+mcsweeps=500
+#how many initial mcsweeps*inititer MC sweeps before recording to disk?
+inititer=1
+#how many records do you want on the disk iteration are there in a run?
+iterations=10
+
 
 #shut up if we are using cluster!!!
 quiet=false
+
+#what type of multiprocessing? (*none, smp, cluster, distributed, cuda, auto)
+#currently only none makes sense.
+multiprocessing=none
+#how many cores are allowed to process in SMP?
+smp_cores=2
+#how many nodes in cluster?
+cluster_nodes=50
+#max number of processes in distributed (voluntary) environment
+distributed_processes=50
+#cuda options???

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