From 19c1fd84d1fd75e9bfd55feb670fda87a2e02086 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Fri, 08 Feb 2019 08:32:29 +0000
Subject: [PATCH] Merge branch 'master' of ssh://git.penic.eu:29418/trisurf-ng

---
 src/io.c |   17 +++++++++++++++--
 1 files changed, 15 insertions(+), 2 deletions(-)

diff --git a/src/io.c b/src/io.c
index 82339cf..943d96b 100644
--- a/src/io.c
+++ b/src/io.c
@@ -980,8 +980,10 @@
 
 	if(vesicle->tape->stretchswitch==1){
 		fprintf(fh,"<DataArray type=\"Float64\" Name=\"stretching_energy\" format=\"ascii\">");
-		for(i=0;i<blist->n+monono*polyno+filno*(fonono-1)
-;i++){
+		for(i=0;i<blist->n;i++){
+			fprintf(fh, "0.0 ");
+		}
+		for(i=0;i<monono*polyno+filno*(fonono-1);i++){
 			fprintf(fh,"0.0 ");
 		}
 		for(i=0;i<vesicle->tlist->n;i++){
@@ -1203,12 +1205,23 @@
 	CFG_SIMPLE_FLOAT("c0",&tape->c0),
 	CFG_SIMPLE_FLOAT("w",&tape->w),
 	CFG_SIMPLE_FLOAT("F",&tape->F),
+/* Variables related to plane confinement */
+	CFG_INT("plane_confinement_switch", 0, CFGF_NONE),
+	CFG_FLOAT("plane_d", 15, CFGF_NONE),
+	CFG_FLOAT("plane_F", 1000, CFGF_NONE),
+/* Variables related to stretching */
+	CFG_FLOAT("stretchswitch", 0, CFGF_NONE),
+	CFG_FLOAT("xkA0",0,CFGF_NONE),
         CFG_END()
     };
     cfg_t *cfg;    
     ts_uint retval;
     cfg = cfg_init(opts, 0);
     retval=cfg_parse_buf(cfg, buffer);
+	tape->plane_confinement_switch=cfg_getint(cfg,"plane_confinement_switch");
+	tape->plane_d=cfg_getfloat(cfg,"plane_d");
+	tape->plane_F=cfg_getfloat(cfg,"plane_F");
+
     if(retval==CFG_FILE_ERROR){
 	fatal("No tape file.",100);
 	}

--
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