From 17fe35ccc428e18dd226e07d5517c4816ef6be44 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Mon, 19 Apr 2021 12:23:07 +0000
Subject: [PATCH] Work done previously

---
 src/tape |   27 ++++++++++++++++++---------
 1 files changed, 18 insertions(+), 9 deletions(-)

diff --git a/src/tape b/src/tape
index 70f526a..4e78aff 100644
--- a/src/tape
+++ b/src/tape
@@ -14,7 +14,7 @@
 # (pswitch=1: calc. p*dV energy contribution)
 pswitch = 0
 # pressure difference: p_inside - p_outside (in units kT/l_min^3):
-pressure=10.0
+pressure=10000.0
 
 #Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol)
 constvolswitch=0
@@ -26,17 +26,17 @@
 
 #Stretching
 stretchswitch=1
-xkA0=10.0
+xkA0=1.0
 
 ####### Polymer (brush) definitions ###########
 # npoly is a number of polymers attached to npoly distinct vertices on vesicle
 npoly=0
 # nmono is a number of monomers in each polymer
-nmono=10
+nmono=20
 # Spring constant between monomers of the polymer
 k_spring=800
 #set to 1 if half of the polymeres are inside the vesicle
-internal_poly=1
+internal_poly=0
 
 ####### Filament (inside the vesicle) definitions ###########
 # nfil is a number of filaments inside the vesicle
@@ -53,18 +53,18 @@
 R_nucleusY=0
 R_nucleusZ=0
 #######  Cell definitions ############
-nxmax=60
-nymax=60
-nzmax=60
+nxmax=100
+nymax=100
+nzmax=100
 
 
 ####### Program Control ############
 #how many MC sweeps between subsequent records of states to disk
 #200000
-mcsweeps=2000
+mcsweeps=200
 #how many initial mcsweeps*inititer MC sweeps before recording to disk?
 #2
-inititer=1
+inititer=0
 #how many records do you want on the disk iteration are there in a run?
 #10000
 iterations=100
@@ -99,3 +99,12 @@
 w=10.0
 #direct force on vesicles with spontaneous curvature (float)
 F=2.0
+
+
+
+#plane confinement
+plane_confinement_switch=0
+#final plane distance (float in lmin)
+plane_d=10
+#plane to vesicle repulsion force while closing
+plane_F=10

--
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