From 17fe35ccc428e18dd226e07d5517c4816ef6be44 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Mon, 19 Apr 2021 12:23:07 +0000
Subject: [PATCH] Work done previously
---
src/initial_distribution.c | 37 +++++++++++++++++++++++++++++++++++--
1 files changed, 35 insertions(+), 2 deletions(-)
diff --git a/src/initial_distribution.c b/src/initial_distribution.c
index 71a2c4f..bed8123 100644
--- a/src/initial_distribution.c
+++ b/src/initial_distribution.c
@@ -33,6 +33,10 @@
retval = mean_curvature_and_energy(vesicle);
ts_fprintf(stdout,"initial_distribution finished!\n");
if(retval);
+// ts_fprintf(stdout,"%e %e %e\n", vesicle->vlist->vtx[0]->x,vesicle->vlist->vtx[0]->y, vesicle->vlist->vtx[0]->z);
+// for(int i=0;i<vesicle->vlist->vtx[0]->neigh_no; i++){
+// ts_fprintf(stdout,"%e %e %e\n", vesicle->vlist->vtx[0]->neigh[i]->x,vesicle->vlist->vtx[0]->neigh[i]->y, vesicle->vlist->vtx[0]->neigh[i]->z);
+// }
return vesicle;
}
@@ -43,7 +47,10 @@
vesicle=initial_distribution_dipyramid(tape->nshell,tape->ncxmax,tape->ncymax,tape->nczmax,tape->stepsize);
vesicle->tape=tape;
+ vesicle->clist->dmin_interspecies = tape->dmin_interspecies*tape->dmin_interspecies;
+ vesicle->poly_list=init_poly_list(tape->npoly,tape->nmono, vesicle->vlist, vesicle);
set_vesicle_values_from_tape(vesicle);
+ initial_population_with_c0(vesicle,tape);
return vesicle;
}
@@ -58,7 +65,7 @@
vesicle->clist->dmin_interspecies = tape->dmin_interspecies*tape->dmin_interspecies;
//Initialize grafted polymers (brush):
- vesicle->poly_list=init_poly_list(tape->npoly,tape->nmono, vesicle->vlist, vesicle);
+ //vesicle->poly_list=init_poly_list(tape->npoly,tape->nmono, vesicle->vlist, vesicle);
vesicle->spring_constant=tape->kspring;
poly_assign_spring_const(vesicle);
@@ -110,12 +117,38 @@
else {
vesicle->sphHarmonics=NULL;
}
+
+ vesicle->tlist->a0=sqrt(3)/4*pow((vesicle->tape->dmax+1.0)/2.0,2);
return TS_SUCCESS;
}
-
+ts_bool initial_population_with_c0(ts_vesicle *vesicle, ts_tape *tape){
+ int rndvtx,i,j;
+ if(tape->number_of_vertices_with_c0>0){
+// ts_fprintf(stderr,"Setting values for spontaneous curvature as defined in tape\n");
+ j=0;
+ for(i=0;i<tape->number_of_vertices_with_c0;i++){
+ rndvtx=rand() % vesicle->vlist->n;
+ if(fabs(vesicle->vlist->vtx[rndvtx]->c-tape->c0)<1e-15){
+ j++;
+ i--;
+ if(j>10*vesicle->vlist->n){
+ fatal("cannot populate vesicle with vertices with spontaneous curvature. Too many spontaneous curvature vertices?",100);
+ }
+ continue;
+ }
+ vesicle->vlist->vtx[rndvtx]->c=tape->c0;
+ }
+ mean_curvature_and_energy(vesicle);
+ if(fabs(tape->w)>1e-16){ //if nonzero energy
+// ts_fprintf(stderr,"Setting attraction between vertices with spontaneous curvature\n");
+ sweep_attraction_bond_energy(vesicle);
+ }
+ }
+ return TS_SUCCESS;
+}
ts_bool pentagonal_dipyramid_vertex_distribution(ts_vertex_list *vlist){
--
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