From 152052a93b7e7b5151c42992c79d8e3667471a3e Mon Sep 17 00:00:00 2001
From: mihaf <miha.fosnaric@gmail.com>
Date: Mon, 10 Mar 2014 11:08:40 +0000
Subject: [PATCH] not using global force_from_tape

---
 src/main.c |   58 ++++++++++++++++++++++++++++++++++++++++++++++------------
 1 files changed, 46 insertions(+), 12 deletions(-)

diff --git a/src/main.c b/src/main.c
index d6c2854..25dc047 100644
--- a/src/main.c
+++ b/src/main.c
@@ -2,8 +2,15 @@
 #include<math.h>
 #include "general.h"
 #include "vertex.h"
-//#include "io.h"
-//#include "initial_timestep.h"
+#include "bond.h"
+#include "triangle.h"
+#include "cell.h"
+#include "vesicle.h"
+#include "io.h"
+#include "initial_distribution.h"
+#include "frame.h"
+#include "timestep.h"
+#include "poly.h"
 
 /** Entrance function to the program
   * @param argv is a number of parameters used in program call (including the program name
@@ -12,16 +19,43 @@
 */
 
 int main(int argv, char *argc[]){
-ts_bool retval;
-ts_vertex_list *vlist=init_vertex_list(5);
+	ts_vesicle *vesicle;
+	ts_tape *tape;
+	ts_uint start_iteration=0;
+	force_from_tape=0;
+	parse_args(argv,argc); // sets global variable command_line_args (defined in io.h)
+	ts_fprintf(stdout,"Starting program...\n\n");
+	if(command_line_args.force_from_tape){
+		ts_fprintf(stdout,"************************************************\n");
+		ts_fprintf(stdout,"**** Generating initial geometry from tape *****\n");
+		ts_fprintf(stdout,"************************************************\n\n");
+		tape=parsetape("tape");
+		vesicle=create_vesicle_from_tape(tape);
+	} else {
 
+		ts_fprintf(stdout,"**********************************************************************\n");
+		ts_fprintf(stdout,"**** Recreating vesicle from dump file and continuing simulation *****\n");
+		ts_fprintf(stdout,"**********************************************************************\n\n");
+		tape=parsetape("tape");
+		vesicle=restore_state(&start_iteration);
+		// nove vrednosti iz tapea...
+/*	vesicle->bending_stiffness=tape->xk0;
+		set_global_values(tape->xk0);
+		vesicle->pressure=tape->pressure;
+*/
+		if(command_line_args.reset_iteration_count) start_iteration=tape->inititer+1;
+		else start_iteration++;
 
-retval=vtx_add_neighbour(VTX(1),VTX(0));
-if(retval==TS_FAIL) printf("1. already a member or vertex is null!\n");
-retval=vtx_add_neighbour(VTX(0),VTX(1));
-if(retval==TS_FAIL) printf("2. already a member or vertex is null!\n");
-VTX_DATA(1)->x=1.0;
-vtx_list_free(vlist);
-printf("Done.\n");
-return 0; //program finished perfectly ok. We return 0.
+		if(start_iteration>=tape->iterations){
+			ts_fprintf(stdout, "Simulation already completed. if you want to rerun it try with --force-from-tape or --reset-iteration-count\n\n");
+			return 0;
+		}
+	}
+
+	run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration);
+	write_master_xml_file("test.pvd");
+	write_dout_fcompat_file(vesicle,"dout");
+	vesicle_free(vesicle);
+	tape_free(tape);
+	return 0; //program finished perfectly ok. We return 0.
 } 

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