From 13f45e61241e43d709df10228b946ed9870e8ebb Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 23 Apr 2019 16:12:05 +0000
Subject: [PATCH] Fixing the vesicle 123 and neighbours just for a test

---
 src/general.h |   21 +++++++++++++++++++--
 1 files changed, 19 insertions(+), 2 deletions(-)

diff --git a/src/general.h b/src/general.h
index 9fefc5b..098c159 100644
--- a/src/general.h
+++ b/src/general.h
@@ -158,6 +158,7 @@
         ts_double solAngle;
 		struct ts_poly *grafted_poly;
 		struct ts_cluster *cluster;
+	ts_uint fixed;
 };
 typedef struct ts_vertex ts_vertex;
 
@@ -195,11 +196,13 @@
 	ts_double znorm;
     ts_double area; // firstly needed for sh.c
     ts_double volume; // firstly needed for sh.c
+	ts_double energy;
 };
 typedef struct ts_triangle ts_triangle;
 
 struct ts_triangle_list{
     ts_uint n;
+	ts_double a0;
     ts_triangle **tria;
 };
 typedef struct ts_triangle_list ts_triangle_list;
@@ -250,6 +253,11 @@
 typedef struct ts_poly_list ts_poly_list;
 
 
+typedef struct{
+	ts_float z_max;
+	ts_float z_min;
+	ts_int force_switch;
+} ts_confinement_plane;
 
 typedef struct {
 	long int nshell;
@@ -258,6 +266,7 @@
 	long int nczmax;
 	long int npoly;
 	long int nmono;
+	long int internal_poly;
 	long int nfil;
 	long int nfono;
 	long int R_nucleus;
@@ -267,6 +276,8 @@
 	long int pswitch;
     long int constvolswitch;
     long int constareaswitch;
+	long int stretchswitch;
+	ts_double xkA0;
     ts_double constvolprecision;
     	char *multiprocessing;
    	long int brezveze0;
@@ -287,6 +298,10 @@
 	long int number_of_vertices_with_c0;
 	ts_double c0;
 	ts_double w;
+	ts_double F;
+	long int plane_confinement_switch;
+	ts_double plane_d;
+	ts_double plane_F;
 } ts_tape;
 
 
@@ -312,13 +327,14 @@
 	ts_double spring_constant;
 	ts_double pressure;
 	ts_int pswitch;
-    ts_tape *tape;
+ 	ts_tape *tape;
 	ts_double R_nucleus;
 	ts_double R_nucleusX;
 	ts_double R_nucleusY;
 	ts_double R_nucleusZ;
 	ts_double nucleus_center[3];
-    ts_double area;
+	ts_double area;
+	ts_confinement_plane confinement_plane;
 } ts_vesicle;
 
 
@@ -371,4 +387,5 @@
 int createPidFile(const char *progName, const char *pidFile, int flags);
 
 int lockRegion(int fd, int type, int whence, int start, int len);
+char *libVersion();
 #endif

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