From 08559613e0fe7c23d329092679a2ff347a92ff4f Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Tue, 25 Dec 2018 22:29:07 +0000
Subject: [PATCH] Added idea for tape files
---
src/plugins.c | 93 +++++++++++++++++++++++++++++++++++++++-------
1 files changed, 78 insertions(+), 15 deletions(-)
diff --git a/src/plugins.c b/src/plugins.c
index 7681984..8947499 100644
--- a/src/plugins.c
+++ b/src/plugins.c
@@ -1,28 +1,91 @@
/* This is a first attempt in implementation of plugins to Trisurf-ng. */
/*
-1. Capabilities of Plugin
--------------------------
-Every plugin should list it's capabilities -- that is what subrutines are available in it. Capabilities list for the moment are:
+Options for tape:
-* PLUGIN_PROGRAM_START (requires subrutine void at_start(void)): runs at startup
-* PLUGIN_VESICLE_INITIALIZED (requires subrutine void after_vesicle_init(vesicle *vesicle):
- runs after vesicle gets initialized.
+extra_plugin_path = "..." (OPTIONAL)
-* PLUGIN_VERTEX_MOVE (requires subrutines:
+vesicle bipyramid {
+ nshell=23
+}
- ts_bool vm_hard_constraint(vesicle *vesicle, vtx *vtx, vtx *old_vtx)
- ts_double vm_energy_before(vesicle *vesicle, vtx *vtx)
- ts_double vm_energy_after(vesicle *vesicle, vtx *vtx)
- ts_double vm_new_state_accepted(vesicle *vesicle, vtx *vtx)
- ts_double vm_new_state_rejected(vesicle *vesicle, vtx *vtx)
+vesicle vtufile {
+ filename="filename"
+}
- )
+vesicle vtudatabase {
+ run_id=123
+ timestep=999
+}
- these subrutines are added into the vertex move into right places
+vesicle properties {
+ xk0=20
+ dmax=1.7
+ dmin_interspecies=1.2
+ stepsize=0.15
+}
-* PLUGIN_BOND_FLIP ( N/A yet)
+space properties {
+ nxmax=60
+ nymax=60
+ nzmax=60
+}
+
+loop control {
+ inner=1000
+ outer=1000
+}
+
+plugin pressure {
+ pressure=10
+}
+
+plugin constant_volume {
+ precision=1e14
+}
+
+plugin constant_area {
+
+}
+
+plugin confinement_plate {
+ distance=5
+ force=10
+ coordinate=2 // 0=x,1=y,2=z
+}
+
+plugin spherical_harmonics {
+ lmax=21
+ filename="abc.csv"
+}
+
+plugin spontaneous_curvature {
+ c0=2
+ N=100
+ w=10
+ force=3
+}
+
+plugin filament {
+ monomers=100
+ xi=10
+}
+
+plugin polymer {
+ polymers = 100
+ monomers = 10
+ elastic_coefficient=100
+ is_internal = true
+}
+
+plugin nucleus {
+ R_nucleus=10
+ R_nucleusX=0
+ R_nucleusY=0
+ R_nucleusZ=0
+}
+
*/
#include "plugins.h"
#include <stdlib.h>
--
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