From 083e03adeaf985c9da1ed31d259ced9bb54c207c Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@fe.uni-lj.si>
Date: Thu, 06 Mar 2014 14:18:21 +0000
Subject: [PATCH] Started with arg parsing

---
 src/main.c |   85 ++++++++++++++++++++++++++++++++++++------
 1 files changed, 73 insertions(+), 12 deletions(-)

diff --git a/src/main.c b/src/main.c
index 38ec4be..0c955dc 100644
--- a/src/main.c
+++ b/src/main.c
@@ -2,8 +2,15 @@
 #include<math.h>
 #include "general.h"
 #include "vertex.h"
-//#include "io.h"
-//#include "initial_timestep.h"
+#include "bond.h"
+#include "triangle.h"
+#include "cell.h"
+#include "vesicle.h"
+#include "io.h"
+#include "initial_distribution.h"
+#include "frame.h"
+#include "timestep.h"
+#include "poly.h"
 
 /** Entrance function to the program
   * @param argv is a number of parameters used in program call (including the program name
@@ -12,20 +19,74 @@
 */
 
 int main(int argv, char *argc[]){
-ts_int i;
+ts_uint inititer,mcsweeps, iterations;
+ts_vesicle *vesicle, *vesicle1;
+
+
+parse_args(argv,argc);
+
+/* THIS SHOULD GO INTO UNIT TEST
 ts_bool retval;
-ts_vertex **vlist=init_vertex_list(5);
+    ts_vertex_list *vlist=init_vertex_list(5);
+ts_vertex_list *vlist1;
+ts_bond_list *blist=init_bond_list();
+ts_triangle_list *tlist=init_triangle_list();
+ts_cell_list *clist=init_cell_list(3,3,3,0.3);
 
-
-retval=vtx_add_neighbour(&vlist[0],&vlist[1]);
+retval=vtx_add_cneighbour(blist,vlist->vtx[1],vlist->vtx[0]);
 if(retval==TS_FAIL) printf("1. already a member or vertex is null!\n");
-retval=vtx_add_neighbour(&vlist[1],&vlist[0]);
-if(retval==TS_FAIL) printf("2. already a member or vertex is null!\n");
 
-for(i=0;i<5;i++){
-vtx_free(&vlist[i]);
+retval=vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
+if(retval==TS_FAIL) printf("2. already a member or vertex is null!\n");
+fprintf(stderr,"Was here");
+retval=vtx_remove_neighbour(vlist->vtx[1],vlist->vtx[0]);
+vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
+fprintf(stderr,"Was here too!\n");
+
+vlist->vtx[0]->x=1.0;
+vlist->vtx[0]->x=1.1;
+vlist1=vertex_list_copy(vlist);
+bond_add(blist, vlist->vtx[1],vlist->vtx[0]);
+triangle_add(tlist,vlist->vtx[1],vlist->vtx[2],vlist->vtx[3]);
+
+triangle_add(tlist,vlist->vtx[1],vlist->vtx[2],vlist->vtx[3]);
+
+printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
+cell_add_vertex(clist->cell[0], vlist->vtx[0]);
+printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
+printf("Cell idx=1 has vertex[0] has x coordinate=%e\n",clist->cell[0]->vertex[0]->x);
+cell_list_cell_occupation_clear(clist);
+printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
+cell_add_vertex(clist->cell[0], vlist->vtx[0]);
+
+
+triangle_list_free(tlist);
+bond_list_free(blist);
+vtx_list_free(vlist);
+cell_list_free(clist);
+
+vtx_list_free(vlist1);
+printf("Tests complete.\n");
+*/
+if(force_from_tape){
+ts_fprintf(stdout,"****************************************************\n");
+ts_fprintf(stdout,"**** Reinitializing initial geometry from tape *****\n");
+ts_fprintf(stdout,"****************************************************\n\n");
+vesicle=parsetape(&mcsweeps, &inititer, &iterations);
+} else {
+
+ts_fprintf(stdout,"**********************************************************************\n");
+ts_fprintf(stdout,"**** Recreating vesicle from dump file and continuing simulation *****\n");
+ts_fprintf(stdout,"**********************************************************************\n\n");
+vesicle1=parsetape(&mcsweeps, &inititer, &iterations);
+vesicle=restore_state();
+vesicle_free(vesicle1);
 }
-free(vlist);
-printf("Done.\n");
+
+run_simulation(vesicle, mcsweeps, inititer, iterations);
+write_master_xml_file("test.pvd");
+write_dout_fcompat_file(vesicle,"dout");
+vesicle_free(vesicle);
+
 return 0; //program finished perfectly ok. We return 0.
 } 

--
Gitblit v1.9.3