From 06afc729f9061c1cfa14c78728d61d518324c2f0 Mon Sep 17 00:00:00 2001
From: Samo Penic <samo.penic@gmail.com>
Date: Wed, 04 May 2022 05:46:43 +0000
Subject: [PATCH] Moved all global variables to separate file and defined extern keyword where appropriate

---
 src/general.h |   24 +++++++++++++-----------
 1 files changed, 13 insertions(+), 11 deletions(-)

diff --git a/src/general.h b/src/general.h
index 7676000..2f15c50 100644
--- a/src/general.h
+++ b/src/general.h
@@ -158,6 +158,7 @@
         ts_double solAngle;
 		struct ts_poly *grafted_poly;
 		struct ts_cluster *cluster;
+	ts_double direct_interaction_force;
 };
 typedef struct ts_vertex ts_vertex;
 
@@ -219,7 +220,7 @@
     ts_cell **cell;
     ts_double dcell;
     ts_double shift;
-    ts_double max_occupancy;
+    ts_uint max_occupancy;
 	ts_double dmin_interspecies;
 } ts_cell_list;
 
@@ -252,6 +253,11 @@
 typedef struct ts_poly_list ts_poly_list;
 
 
+typedef struct{
+	ts_float z_max;
+	ts_float z_min;
+	ts_int force_switch;
+} ts_confinement_plane;
 
 typedef struct {
 	long int nshell;
@@ -293,6 +299,9 @@
 	ts_double c0;
 	ts_double w;
 	ts_double F;
+	long int plane_confinement_switch;
+	ts_double plane_d;
+	ts_double plane_F;
 } ts_tape;
 
 
@@ -318,13 +327,14 @@
 	ts_double spring_constant;
 	ts_double pressure;
 	ts_int pswitch;
-    ts_tape *tape;
+ 	ts_tape *tape;
 	ts_double R_nucleus;
 	ts_double R_nucleusX;
 	ts_double R_nucleusY;
 	ts_double R_nucleusZ;
 	ts_double nucleus_center[3];
-    ts_double area;
+	ts_double area;
+	ts_confinement_plane confinement_plane;
 } ts_vesicle;
 
 
@@ -342,14 +352,6 @@
 	ts_cluster **cluster;
 } ts_cluster_list;
 
-
-/* GLOBAL VARIABLES */
-
-int quiet;
-ts_double V0;
-ts_double A0;
-ts_double epsvol;
-ts_double epsarea;
 /* FUNCTIONS */
 
 /** Non-fatal error function handler:

--
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