Prepared skeleton for cluster counting routines

Samo Penic

2016-07-03 69a174c6050ac0b88b8add7ffc19cce38f2170f9

Prepared skeleton for cluster counting routines

 src/Makefile.am

@@ -1,5 +1,5 @@
bin_PROGRAMS = trisurf tsmeasure
trisurf_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c dumpstate.c frame.c energy.c timestep.c vertexmove.c bondflip.c main.c poly.c stats.c sh.c shcomplex.c constvol.c snapshot.c restore.c
trisurf_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c dumpstate.c frame.c energy.c timestep.c vertexmove.c bondflip.c main.c poly.c stats.c sh.c shcomplex.c constvol.c snapshot.c restore.c cluster.c
GITVERSION:=$(shell git --no-pager describe --tags --always --dirty)
AM_CFLAGS = -Wall -Werror -DTS_VERSION=\"$(GITVERSION)\" -fgnu89-inline
AM_CPPFLAGS = ${libxml2_CFLAGS} -fgnu89-inline
@@ -18,7 +18,7 @@
#spherical_trisurf_ff_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c frame.c energy.c timestep.c vertexmove.c spherical_trisurf_ff.c sh.c bondflip.c poly.c stats.c shcomplex.c


tsmeasure_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c dumpstate.c frame.c energy.c timestep.c vertexmove.c bondflip.c tsmeasure.c poly.c stats.c sh.c shcomplex.c constvol.c snapshot.c restore.c
tsmeasure_SOURCES = general.c vertex.c bond.c triangle.c cell.c vesicle.c initial_distribution.c io.c dumpstate.c frame.c energy.c timestep.c vertexmove.c bondflip.c tsmeasure.c poly.c stats.c sh.c shcomplex.c constvol.c snapshot.c restore.c cluster.c
tsmeasure_LDADD = ${libcurl_LIBS} ${libxml2_LIBS}
#gitversion.c: .git/HEAD .git/index
#    echo "const char *gitversion = \"$(shell git rev-parse HEAD)\";" > $@

 src/cluster.h

 src/general.h

@@ -319,6 +319,18 @@



typedef struct{
    ts_uint nvtx;
    ts_uint idx;
    ts_vertex **vtx;
} ts_cluster;

typedef struct{
    ts_uint n;
    ts_cluster **cluster;
} ts_cluster_list;


/* GLOBAL VARIABLES */

int quiet;