| | |
|---|
| | | ts_tape *tape; |
|---|
| | | ts_uint start_iteration=0; |
|---|
| | | force_from_tape=0; |
|---|
| | | /* Area and volume for constant area and constant volume are initialized to be zero */ |
|---|
| | | A0=0; |
|---|
| | | V0=0; |
|---|
| | | /* create lock file */ |
|---|
| | | createPidFile("ts_trisurf",".lock",0); |
|---|
| | | parse_args(argv,argc); // sets global variable command_line_args (defined in io.h) |
|---|
| | |
|---|
| | | ts_fprintf(stdout,"**** Restoring vesicle from VTK points list ****\n"); |
|---|
| | | ts_fprintf(stdout,"************************************************\n\n"); |
|---|
| | | vesicle = parseDump(command_line_args.dump_from_vtk); |
|---|
| | | // write_vertex_xml_file(vesicle,9999); // here you can test if restoration and rewritting results in the same dump file. Only the date od creation of dump file must differ. |
|---|
| | | tape = vesicle->tape; |
|---|
| | | int arguments_no; |
|---|
| | | FILE *fd=fopen(".status","r"); |
|---|
| | | if(fd!=NULL){ |
|---|
| | | arguments_no=fscanf(fd,"%u", &start_iteration); |
|---|
| | | if(arguments_no==0){ |
|---|
| | | ts_fprintf(stdout,"No information of start iteration in .status file"); |
|---|
| | | ts_fprintf(stdout,"No information of start iteration in .status file\n"); |
|---|
| | | } |
|---|
| | | fclose(fd); |
|---|
| | | start_iteration++; |
|---|
| | | start_iteration++; |
|---|
| | | } |
|---|
| | | else |
|---|
| | | ts_fprintf(stdout,"No .status file. The iteration count will start from 0"); |
|---|
| | | ts_fprintf(stdout,"No .status file. The iteration count will start from 0\n"); |
|---|
| | | /* Here you should read new tape file, reassign some values in vertex from the tape and assign read tape to vesicle->tape */ |
|---|
| | | // tape=parsetape(command_line_args.tape_fullfilename); |
|---|
| | | // vesicle=vtk2vesicle(command_line_args.dump_from_vtk,tape); |
|---|
| | |
|---|
| | | } |
|---|
| | | } |
|---|
| | | //printf("nucleus coords: %.17e %.17e %.17e\n",vesicle->nucleus_center[0], vesicle->nucleus_center[1], vesicle->nucleus_center[2]); |
|---|
| | | // write_vertex_xml_file(vesicle,0); |
|---|
| | | // exit(1); |
|---|
| | | |
|---|
| | | //write_vertex_xml_file(vesicle,1000); |
|---|
| | | run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration); |
|---|
| | | write_master_xml_file(command_line_args.output_fullfilename); |
|---|
| | | write_dout_fcompat_file(vesicle,"dout"); |
|---|
