Program parameters are finally read from tape. Initial tests are removed

Samo Penic

2013-10-20 b14a8d3d373ab1682a8a713e4f2a3795934d6b26

 src/main.c

@@ -18,23 +18,25 @@
*/

int main(int argv, char *argc[]){
ts_uint i,n;
ts_vesicle *vesicle;
/* THIS SHOULD GO INTO UNIT TEST
ts_bool retval;
ts_uint i;
    ts_vertex_list *vlist=init_vertex_list(5);
ts_vertex_list *vlist1;
ts_bond_list *blist=init_bond_list();
ts_triangle_list *tlist=init_triangle_list();
ts_cell_list *clist=init_cell_list(3,3,3,0.3);
ts_vesicle *vesicle;

retval=vtx_add_cneighbour(blist,vlist->vtx[1],vlist->vtx[0]);
if(retval==TS_FAIL) printf("1. already a member or vertex is null!\n");

retval=vtx_add_cneighbour(blist,vlist->vtx[0],vlist->vtx[1]);
retval=vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
if(retval==TS_FAIL) printf("2. already a member or vertex is null!\n");

retval=vtx_remove_neighbour(vlist->vtx[0],vlist->vtx[1]);
fprintf(stderr,"Was here");
retval=vtx_remove_neighbour(vlist->vtx[1],vlist->vtx[0]);
vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
fprintf(stderr,"Was here too!\n");

vlist->vtx[0]->x=1.0;
vlist->vtx[0]->x=1.1;
@@ -60,19 +62,21 @@

vtx_list_free(vlist1);
printf("Tests complete.\n");
vesicle=initial_distribution_dipyramid(17,60,60,60,0.15);
//parsetape(vesicle,&i);
*/
vesicle=parsetape(&n);

//these four must come from parsetype!
/*
vesicle->dmax=1.67*1.67;
vesicle->stepsize=0.15;
vesicle->clist->max_occupancy=8;
vesicle->bending_rigidity=25.0;
fprintf(stderr,"xk=%f",vesicle->bending_rigidity);
*/
// fprintf(stderr,"xk=%f\n",vesicle->bending_rigidity);

centermass(vesicle);
cell_occupation(vesicle);
for(i=0;i<10000;i++){
for(i=0;i<n;i++){
single_timestep(vesicle);
if(i%100==0){
write_vertex_xml_file(vesicle,i/100);